Wall clock time and date at job start Mon Mar 30 2020 01:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46729 * 2 1 4 4 C 1.50700 * 109.46871 * 119.99998 * 2 1 3 5 5 H 1.08004 * 119.99669 * 120.00046 * 4 2 1 6 6 C 1.37875 * 120.00023 * 299.99868 * 4 2 1 7 7 N 1.31521 * 119.99703 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00342 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47376 * 89.99523 * 8 6 4 10 10 H 1.48504 * 109.47432 * 210.00061 * 8 6 4 11 11 H 1.48504 * 109.46947 * 329.99627 * 8 6 4 12 12 N 1.46892 * 109.47174 * 240.00113 * 2 1 3 13 13 C 1.46842 * 111.00192 * 183.95490 * 12 2 1 14 14 C 1.53039 * 109.52666 * 185.84212 * 13 12 2 15 15 C 1.53123 * 109.27546 * 300.81951 * 14 13 12 16 16 C 1.53120 * 109.21163 * 57.62218 * 15 14 13 17 17 H 1.09000 * 109.50719 * 62.32149 * 16 15 14 18 18 O 1.42904 * 109.49892 * 182.43619 * 16 15 14 19 19 C 1.46848 * 110.99938 * 308.16419 * 12 2 1 20 20 H 1.08997 * 109.47215 * 299.99954 * 1 2 3 21 21 H 1.09004 * 109.47219 * 59.99817 * 1 2 3 22 22 H 1.08999 * 109.47075 * 179.97438 * 1 2 3 23 23 H 0.96998 * 119.99462 * 180.02562 * 7 6 4 24 24 H 1.09001 * 109.46203 * 65.82095 * 13 12 2 25 25 H 1.09004 * 109.46228 * 305.85648 * 13 12 2 26 26 H 1.08999 * 109.50420 * 180.88146 * 14 13 12 27 27 H 1.09001 * 109.50541 * 60.75500 * 14 13 12 28 28 H 1.09002 * 109.52319 * 177.56011 * 15 14 13 29 29 H 1.08995 * 109.52318 * 297.68693 * 15 14 13 30 30 H 0.96696 * 114.00241 * 299.99560 * 18 16 15 31 31 H 1.08999 * 109.46555 * 294.17605 * 19 12 2 32 32 H 1.09000 * 109.46248 * 54.14574 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5566 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9759 1.9951 3.9069 11 1 0.8471 2.1765 1.4921 12 7 2.0197 -0.6924 -1.1994 13 6 3.4845 -0.7945 -1.1870 14 6 3.9672 -1.3877 -2.5126 15 6 3.3421 -2.7723 -2.7041 16 6 1.8166 -2.6464 -2.6641 17 1 1.4818 -2.0154 -3.4875 18 8 1.2276 -3.9427 -2.7855 19 6 1.3965 -2.0152 -1.3347 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.9034 -0.5279 4.4375 24 1 3.7967 -1.4392 -0.3654 25 1 3.9166 0.1975 -1.0544 26 1 5.0533 -1.4778 -2.4969 27 1 3.6672 -0.7364 -3.3335 28 1 3.6488 -3.1805 -3.6672 29 1 3.6738 -3.4354 -1.9052 30 1 1.4542 -4.4025 -3.6054 31 1 1.7184 -2.6542 -0.5125 32 1 0.3118 -1.9099 -1.3094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218445151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:20 Heat of formation + Delta-G solvation = -72.155090 kcal Electronic energy + Delta-G solvation = -13625.060111 eV Core-core repulsion = 11391.437262 eV Total energy + Delta-G solvation = -2233.622848 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.35818 -37.63496 -35.39079 -33.84022 -30.83569 -30.65732 -27.15682 -25.35033 -23.47401 -21.84832 -20.76859 -18.66653 -18.14108 -17.35674 -16.36510 -15.77843 -15.43735 -15.20336 -14.68712 -14.53843 -14.19448 -13.90291 -13.71334 -13.09993 -12.95480 -12.51270 -12.42273 -11.95091 -11.77828 -11.70090 -11.50662 -11.34978 -11.15008 -10.76854 -10.65834 -9.03193 -8.33640 -6.39120 1.29876 1.34933 1.46083 2.29555 2.93595 3.02287 3.69291 3.85757 4.00108 4.14215 4.35192 4.48315 4.55739 4.59423 4.68267 4.73018 4.91153 4.96417 5.02633 5.06423 5.10071 5.17253 5.24675 5.39338 5.43082 5.55465 6.11526 6.33329 6.40961 6.67963 6.97838 7.28922 8.83212 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047321 B = 0.011057 C = 0.010656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.566673 B = 2531.780484 C = 2627.095276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.174 3.826 3 H 0.042 0.958 4 C -0.542 4.542 5 H 0.030 0.970 6 C 0.012 3.988 7 N -0.950 5.950 8 Si 0.955 3.045 9 H -0.267 1.267 10 H -0.299 1.299 11 H -0.242 1.242 12 N -0.515 5.515 13 C 0.055 3.945 14 C -0.104 4.104 15 C -0.146 4.146 16 C 0.114 3.886 17 H 0.079 0.921 18 O -0.586 6.586 19 C 0.064 3.936 20 H 0.036 0.964 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.265 0.735 24 H 0.006 0.994 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.396 0.604 31 H 0.001 0.999 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 0.050 -14.536 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.065 3.935 3 H 0.059 0.941 4 C -0.580 4.580 5 H 0.049 0.951 6 C -0.186 4.186 7 N -0.590 5.590 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.227 1.227 11 H -0.166 1.166 12 N -0.239 5.239 13 C -0.073 4.073 14 C -0.142 4.142 15 C -0.184 4.184 16 C 0.055 3.945 17 H 0.096 0.904 18 O -0.394 6.394 19 C -0.064 4.064 20 H 0.055 0.945 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.246 0.754 31 H 0.019 0.981 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.526 0.473 -14.208 14.225 hybrid contribution 0.205 -0.352 1.330 1.391 sum -0.321 0.121 -12.878 12.883 Atomic orbital electron populations 1.22162 0.96916 1.01077 1.00074 1.19665 0.92748 0.94575 0.86465 0.94054 1.21847 1.31602 1.12721 0.91870 0.95133 1.25908 0.97165 1.00163 0.95316 1.70081 1.47595 1.42618 0.98666 0.85766 0.78899 0.79728 0.77484 1.19326 1.22693 1.16576 1.62333 1.06117 1.17317 1.38159 1.22025 0.88267 1.00131 0.96908 1.21527 1.00356 0.95777 0.96528 1.22268 0.95464 0.97882 1.02738 1.21698 0.92124 0.83830 0.96818 0.90364 1.86455 1.74916 1.31281 1.46783 1.21801 0.99630 0.89738 0.95276 0.94532 0.91159 0.93208 0.92590 0.97568 0.91439 0.89919 0.89655 0.88381 0.93849 0.75359 0.98069 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.18 8.17 71.98 0.59 -5.60 16 2 C 0.17 8.22 2.08 44.17 0.09 8.31 16 3 H 0.04 1.98 7.20 -2.38 -0.02 1.96 16 4 C -0.54 -31.20 7.79 25.60 0.20 -31.00 16 5 H 0.03 1.99 6.09 -2.91 -0.02 1.98 16 6 C 0.01 0.71 5.45 84.65 0.46 1.17 16 7 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 8 Si 0.95 45.24 24.37 68.60 1.67 46.91 16 9 H -0.27 -12.10 6.87 99.48 0.68 -11.42 16 10 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 11 H -0.24 -10.50 6.53 99.48 0.65 -9.85 16 12 N -0.51 -21.22 4.71 -875.49 -4.13 -25.34 16 13 C 0.06 2.14 4.97 86.33 0.43 2.57 16 14 C -0.10 -2.88 6.10 30.65 0.19 -2.70 16 15 C -0.15 -3.91 5.62 30.68 0.17 -3.74 16 16 C 0.11 3.45 3.64 30.65 0.11 3.56 16 17 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 18 O -0.59 -16.82 13.33 -148.98 -1.99 -18.80 16 19 C 0.06 2.59 4.39 86.33 0.38 2.97 16 20 H 0.04 1.58 3.27 -2.39 -0.01 1.58 16 21 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 22 H 0.05 2.15 6.19 -2.39 -0.01 2.14 16 23 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 24 H 0.01 0.28 6.46 -2.39 -0.02 0.27 16 25 H 0.07 2.57 8.12 -2.38 -0.02 2.55 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.40 6.69 9.08 -74.06 -0.67 6.01 16 31 H 0.00 0.04 7.17 -2.39 -0.02 0.03 16 32 H 0.07 2.97 5.84 -2.39 -0.01 2.95 16 Total: -1.00 -69.06 241.66 -1.16 -70.22 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.36 Total: 11.55 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 2.62 Total: -24.44 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -3.83 Total: -85.44 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -1.99 Total: -18.80 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.67 Total: 46.91 kcal Total: -69.06 -1.16 -70.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218445151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.936 kcal (2) G-P(sol) polarization free energy of solvation -69.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds