Wall clock time and date at job start Mon Mar 30 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30149 * 125.18120 * 2 1 4 4 C 1.35985 * 109.16610 * 180.24592 * 3 2 1 5 5 C 1.41126 * 126.45286 * 179.72615 * 4 3 2 6 6 H 1.08002 * 120.00014 * 180.02562 * 5 4 3 7 7 C 1.39688 * 119.99774 * 0.02562 * 5 4 3 8 8 N 1.31054 * 119.99794 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99864 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47530 * 60.00194 * 9 7 5 11 11 H 1.48504 * 109.47087 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47205 * 300.00187 * 9 7 5 13 13 C 1.39345 * 107.09979 * 359.73712 * 4 3 2 14 14 Cl 1.73604 * 126.84076 * 179.97438 * 13 4 3 15 15 N 1.36066 * 125.18436 * 179.79719 * 2 1 3 16 16 C 1.46506 * 126.11286 * 0.02800 * 15 2 1 17 17 H 1.08997 * 109.46770 * 270.20092 * 1 2 3 18 18 H 1.08995 * 109.46808 * 30.19668 * 1 2 3 19 19 H 1.08993 * 109.46834 * 150.20089 * 1 2 3 20 20 H 0.97007 * 119.99574 * 179.97438 * 8 7 5 21 21 H 1.08999 * 109.46871 * 269.70968 * 16 15 2 22 22 H 1.08994 * 109.46947 * 29.70676 * 16 15 2 23 23 H 1.08997 * 109.47271 * 149.71192 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2569 1.0638 0.0000 4 6 3.5639 0.6886 -0.0055 5 6 4.6830 1.5483 -0.0127 6 1 5.6811 1.1356 -0.0171 7 6 4.4999 2.9332 -0.0143 8 7 3.2888 3.4339 -0.0085 9 14 5.9811 4.0712 -0.0245 10 1 6.7935 3.8155 -1.2411 11 1 5.5207 5.4830 -0.0239 12 1 6.8069 3.8198 1.1839 13 6 3.5903 -0.7046 -0.0029 14 17 4.9991 -1.7190 -0.0083 15 7 2.2910 -1.1121 0.0039 16 6 1.8212 -2.4998 0.0083 17 1 -0.3633 0.0036 1.0276 18 1 -0.3633 0.8882 -0.5169 19 1 -0.3633 -0.8917 -0.5107 20 1 3.1616 4.3956 -0.0091 21 1 1.7093 -2.8422 1.0370 22 1 0.8595 -2.5593 -0.5012 23 1 2.5454 -3.1301 -0.5077 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218773679.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:12 Heat of formation + Delta-G solvation = 22.430593 kcal Electronic energy + Delta-G solvation = -10751.108252 eV Core-core repulsion = 8625.204011 eV Total energy + Delta-G solvation = -2125.904241 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.90539 -37.08252 -35.65921 -33.88297 -32.08754 -29.01154 -27.67091 -25.38925 -21.77095 -20.36165 -18.87336 -17.13325 -16.54145 -16.40461 -15.26327 -14.75318 -14.13104 -13.95545 -13.46879 -13.28112 -13.06171 -12.83963 -12.81103 -12.23238 -12.19522 -12.00492 -11.70025 -11.09240 -10.06868 -9.85866 -8.80237 -8.26234 -6.10705 1.28693 1.36022 1.43470 1.55491 1.61615 2.34156 2.57870 2.73687 3.65455 4.01212 4.14815 4.42965 4.50666 4.69258 4.88470 5.09375 5.14816 5.43158 5.71532 5.81120 6.37011 6.80481 6.97656 7.23282 7.98111 8.69126 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.037607 B = 0.014050 C = 0.010306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.372324 B = 1992.399072 C = 2716.320934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.180 3.820 3 N -0.506 5.506 4 C 0.182 3.818 5 C -0.480 4.480 6 H 0.077 0.923 7 C 0.028 3.972 8 N -0.806 5.806 9 Si 0.980 3.020 10 H -0.262 1.262 11 H -0.271 1.271 12 H -0.263 1.263 13 C -0.162 4.162 14 Cl -0.044 7.044 15 N -0.469 5.469 16 C 0.077 3.923 17 H 0.084 0.916 18 H 0.078 0.922 19 H 0.097 0.903 20 H 0.272 0.728 21 H 0.075 0.925 22 H 0.108 0.892 23 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 -7.690 -0.097 8.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.082 4.082 3 N -0.231 5.231 4 C 0.057 3.943 5 C -0.515 4.515 6 H 0.095 0.905 7 C -0.187 4.187 8 N -0.432 5.432 9 Si 0.801 3.199 10 H -0.187 1.187 11 H -0.195 1.195 12 H -0.187 1.187 13 C -0.296 4.296 14 Cl -0.016 7.016 15 N -0.162 5.162 16 C -0.065 4.065 17 H 0.103 0.897 18 H 0.096 0.904 19 H 0.116 0.884 20 H 0.082 0.918 21 H 0.093 0.907 22 H 0.126 0.874 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.793 -6.958 -0.091 7.926 hybrid contribution 1.203 -0.494 0.023 1.300 sum -2.591 -7.453 -0.067 7.890 Atomic orbital electron populations 1.20159 0.82676 1.04164 1.03704 1.24306 0.96924 0.81307 1.05644 1.71253 1.01963 1.26430 1.23420 1.18619 0.91479 0.87566 0.96636 1.18792 0.92119 0.91137 1.49469 0.90505 1.26685 0.99489 1.00004 0.92568 1.70230 1.23489 1.13216 1.36275 0.85312 0.78124 0.76737 0.79696 1.18693 1.19530 1.18722 1.21493 0.80529 0.90422 1.37136 1.98166 1.36621 1.68472 1.98344 1.44579 1.04024 1.07820 1.59805 1.22028 1.01967 0.79005 1.03500 0.89745 0.90363 0.88430 0.91781 0.90653 0.87402 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.52 10.18 71.24 0.72 -0.79 14 2 C 0.18 8.21 7.87 137.90 1.09 9.29 14 3 N -0.51 -29.04 9.50 -179.59 -1.71 -30.75 14 4 C 0.18 10.74 6.69 39.48 0.26 11.00 14 5 C -0.48 -28.58 9.23 23.33 0.22 -28.36 14 6 H 0.08 4.40 7.79 -2.91 -0.02 4.38 14 7 C 0.03 1.58 5.49 85.16 0.47 2.05 14 8 N -0.81 -47.41 11.94 21.79 0.26 -47.15 14 9 Si 0.98 42.44 29.56 68.60 2.03 44.47 14 10 H -0.26 -10.99 7.11 99.48 0.71 -10.28 14 11 H -0.27 -11.10 7.11 99.48 0.71 -10.39 14 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 14 13 C -0.16 -8.23 7.62 84.29 0.64 -7.59 14 14 Cl -0.04 -1.88 28.70 -2.72 -0.08 -1.95 14 15 N -0.47 -20.10 3.15 -522.51 -1.65 -21.75 14 16 C 0.08 2.19 10.81 127.77 1.38 3.57 14 17 H 0.08 2.34 8.14 -2.39 -0.02 2.32 14 18 H 0.08 2.51 8.14 -2.39 -0.02 2.49 14 19 H 0.10 2.22 7.01 -2.39 -0.02 2.21 14 20 H 0.27 14.67 8.30 -92.70 -0.77 13.90 14 21 H 0.07 1.91 8.14 -2.39 -0.02 1.89 14 22 H 0.11 2.29 6.98 -2.39 -0.02 2.28 14 23 H 0.07 2.07 7.89 -2.39 -0.02 2.06 14 Total: -1.00 -72.27 224.48 4.86 -67.41 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 1.22 Total: 0.55 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 4.78 Total: -10.83 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -3.09 Total: -99.64 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.95 kcal Total: -72.27 4.86 -67.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218773679.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.845 kcal (2) G-P(sol) polarization free energy of solvation -72.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds