Wall clock time and date at job start Mon Mar 30 2020 01:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47270 * 2 1 4 4 C 1.50704 * 109.47153 * 239.99901 * 2 1 3 5 5 H 1.07995 * 120.00372 * 245.16489 * 4 2 1 6 6 C 1.37875 * 119.99760 * 65.16524 * 4 2 1 7 7 N 1.31512 * 120.00352 * 200.11367 * 6 4 2 8 8 Si 1.86800 * 120.00016 * 20.11553 * 6 4 2 9 9 H 1.48498 * 109.47474 * 94.69257 * 8 6 4 10 10 H 1.48504 * 109.47135 * 214.69390 * 8 6 4 11 11 H 1.48508 * 109.47265 * 334.68832 * 8 6 4 12 12 N 1.46901 * 109.47035 * 120.00076 * 2 1 3 13 13 C 1.46897 * 111.00296 * 250.92578 * 12 2 1 14 14 C 1.53005 * 110.45339 * 296.51766 * 13 12 2 15 15 C 1.54507 * 110.51130 * 173.91480 * 13 12 2 16 16 C 1.54476 * 104.18400 * 241.14585 * 15 13 12 17 17 O 1.44655 * 104.69716 * 336.18935 * 16 15 13 18 18 C 1.44421 * 105.36464 * 40.34550 * 17 16 15 19 19 H 1.09001 * 109.47170 * 296.47555 * 1 2 3 20 20 H 1.09000 * 109.46724 * 56.46903 * 1 2 3 21 21 H 1.08997 * 109.47057 * 176.47329 * 1 2 3 22 22 H 0.96991 * 120.00503 * 180.02562 * 7 6 4 23 23 H 1.00900 * 111.00244 * 126.96693 * 12 2 1 24 24 H 1.09000 * 109.47053 * 293.72987 * 14 13 12 25 25 H 1.09004 * 109.47049 * 53.73014 * 14 13 12 26 26 H 1.09000 * 109.47355 * 173.72861 * 14 13 12 27 27 H 1.08995 * 110.51279 * 359.86069 * 15 13 12 28 28 H 1.09003 * 110.50911 * 122.43608 * 15 13 12 29 29 H 1.08996 * 110.37494 * 94.92277 * 16 15 13 30 30 H 1.09000 * 110.37754 * 217.26283 * 16 15 13 31 31 H 1.09001 * 110.37404 * 200.73519 * 18 17 16 32 32 H 1.09001 * 110.37734 * 78.39609 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5827 -1.6346 -1.1336 6 6 1.7893 -0.1805 -2.4799 7 7 1.8587 -0.9489 -3.5450 8 14 1.3614 1.6289 -2.6600 9 1 2.5945 2.4023 -2.9544 10 1 0.3923 1.8001 -3.7721 11 1 0.7572 2.1228 -1.3965 12 7 2.0197 -0.6925 1.1994 13 6 2.6177 0.2564 2.1480 14 6 3.8499 0.9228 1.5326 15 6 2.9903 -0.4581 3.4663 16 6 2.1403 0.2587 4.5387 17 8 1.8598 1.5609 3.9746 18 6 1.5841 1.3212 2.5773 19 1 -0.3633 0.4582 0.9199 20 1 -0.3633 0.5677 -0.8567 21 1 -0.3633 -1.0257 -0.0632 22 1 1.6881 -0.5761 -4.4240 23 1 2.6743 -1.4204 0.9549 24 1 4.6302 0.1765 1.3837 25 1 3.5825 1.3653 0.5730 26 1 4.2147 1.7013 2.2026 27 1 2.7285 -1.5149 3.4151 28 1 4.0528 -0.3386 3.6784 29 1 1.2127 -0.2860 4.7142 30 1 2.7044 0.3580 5.4661 31 1 1.7206 2.2364 2.0012 32 1 0.5711 0.9395 2.4503 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229455146.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:59 Heat of formation + Delta-G solvation = -66.533533 kcal Electronic energy + Delta-G solvation = -13612.994963 eV Core-core repulsion = 11379.615884 eV Total energy + Delta-G solvation = -2233.379079 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.80136 -37.54012 -34.85433 -33.02119 -30.58570 -29.22842 -27.71034 -26.70348 -23.75154 -21.95673 -20.41362 -18.99082 -17.21210 -17.01398 -16.79513 -15.96126 -15.25756 -15.15553 -14.76944 -14.37899 -14.13586 -13.74195 -13.46487 -12.97956 -12.96062 -12.70648 -12.35490 -12.22465 -12.08550 -11.90754 -11.62238 -11.36302 -11.20590 -10.60659 -10.50304 -9.15425 -8.35772 -6.31241 1.30418 1.35627 1.44267 2.32309 2.95791 3.04134 3.54429 3.62278 3.95323 4.04745 4.34511 4.40334 4.59602 4.65313 4.69149 4.79339 4.82793 4.88618 4.93432 5.05959 5.10495 5.14154 5.18489 5.34965 5.56795 5.71141 5.81246 6.06195 6.44606 6.66695 6.87551 7.32868 8.80783 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051977 B = 0.010892 C = 0.010493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.573198 B = 2570.188954 C = 2667.778442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.187 3.813 3 H 0.017 0.983 4 C -0.539 4.539 5 H 0.039 0.961 6 C 0.027 3.973 7 N -0.933 5.933 8 Si 0.920 3.080 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.235 1.235 12 N -0.666 5.666 13 C 0.074 3.926 14 C -0.167 4.167 15 C -0.138 4.138 16 C 0.047 3.953 17 O -0.394 6.394 18 C 0.057 3.943 19 H 0.050 0.950 20 H 0.032 0.968 21 H 0.039 0.961 22 H 0.266 0.734 23 H 0.339 0.661 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 4.437 13.505 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.078 3.922 3 H 0.034 0.966 4 C -0.577 4.577 5 H 0.057 0.943 6 C -0.172 4.172 7 N -0.572 5.572 8 Si 0.744 3.256 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.158 1.158 12 N -0.298 5.298 13 C -0.018 4.018 14 C -0.226 4.226 15 C -0.176 4.176 16 C -0.029 4.029 17 O -0.313 6.313 18 C -0.020 4.020 19 H 0.069 0.931 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.158 0.842 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.099 0.901 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.431 4.628 13.753 14.518 hybrid contribution 0.728 0.433 -1.534 1.752 sum 1.159 5.061 12.219 13.277 Atomic orbital electron populations 1.22023 0.97565 1.00150 0.98799 1.19370 0.92529 0.93239 0.87087 0.96578 1.21543 1.36141 1.08770 0.91225 0.94296 1.25676 0.94464 1.01595 0.95511 1.70149 1.50401 1.37021 0.99594 0.86195 0.78482 0.81662 0.79261 1.20265 1.21069 1.15795 1.60837 1.41264 1.12875 1.14800 1.22388 0.92986 0.92648 0.93772 1.22434 0.98134 1.01361 1.00676 1.22978 1.01178 1.00982 0.92484 1.23572 0.99043 0.83046 0.97281 1.89074 1.91001 1.29245 1.21969 1.23504 0.98357 0.98042 0.82109 0.93104 0.94922 0.94151 0.92530 0.84246 0.92236 0.93879 0.91113 0.89412 0.89503 0.91800 0.86914 0.90061 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 8.91 71.98 0.64 -4.81 16 2 C 0.19 8.40 1.28 44.17 0.06 8.45 16 3 H 0.02 0.75 3.97 -2.39 -0.01 0.74 16 4 C -0.54 -29.51 8.98 25.60 0.23 -29.28 16 5 H 0.04 2.35 7.62 -2.91 -0.02 2.33 16 6 C 0.03 1.53 5.31 84.65 0.45 1.98 16 7 N -0.93 -56.92 13.96 21.45 0.30 -56.62 16 8 Si 0.92 42.86 25.98 68.60 1.78 44.65 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.24 -10.05 5.68 99.48 0.57 -9.48 16 12 N -0.67 -25.64 5.92 -447.12 -2.65 -28.28 16 13 C 0.07 2.37 0.89 4.54 0.00 2.38 16 14 C -0.17 -5.36 8.26 71.98 0.59 -4.76 16 15 C -0.14 -3.48 6.51 31.61 0.21 -3.27 16 16 C 0.05 1.10 7.65 72.48 0.55 1.65 16 17 O -0.39 -11.83 11.65 -148.98 -1.74 -13.56 16 18 C 0.06 1.83 5.74 72.48 0.42 2.25 16 19 H 0.05 1.89 6.15 -2.39 -0.01 1.88 16 20 H 0.03 1.41 5.45 -2.39 -0.01 1.39 16 21 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.27 15.22 8.31 -92.72 -0.77 14.45 16 23 H 0.34 13.55 7.89 -89.69 -0.71 12.84 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.04 1.58 6.33 -2.39 -0.02 1.57 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.09 2.17 7.97 -2.39 -0.02 2.15 16 28 H 0.09 1.91 7.73 -2.39 -0.02 1.89 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.63 7.81 -2.39 -0.02 2.61 16 32 H 0.07 2.20 6.03 -2.39 -0.01 2.18 16 Total: -1.00 -61.27 246.91 1.11 -60.16 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.26 Total: 19.07 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 3.15 Total: -25.41 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -2.35 Total: -84.90 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.74 Total: -13.56 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.78 Total: 44.65 kcal Total: -61.27 1.11 -60.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229455146.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.378 kcal (2) G-P(sol) polarization free energy of solvation -61.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds