Wall clock time and date at job start Mon Mar 30 2020 01:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00504 * 2 1 4 4 C 1.53786 * 113.61442 * 210.00107 * 3 2 1 5 5 C 1.53780 * 87.07902 * 219.93036 * 4 3 2 6 6 N 1.46906 * 113.61092 * 139.98050 * 5 4 3 7 7 C 1.46902 * 110.99573 * 156.53119 * 6 5 4 8 8 H 1.08997 * 109.47515 * 325.00070 * 7 6 5 9 9 C 1.52999 * 109.47197 * 85.00442 * 7 6 5 10 10 C 1.50699 * 109.46726 * 204.99752 * 7 6 5 11 11 H 1.08006 * 120.00161 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99813 * 180.02562 * 10 7 6 13 13 N 1.31507 * 120.00087 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99843 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47505 * 59.99770 * 14 12 10 16 16 H 1.48498 * 109.47219 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46977 * 299.99418 * 14 12 10 18 18 C 1.53785 * 87.17195 * 25.39184 * 5 4 3 19 19 H 1.08997 * 109.47378 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.46753 * 300.00186 * 1 2 3 21 21 H 1.09000 * 109.47047 * 59.99888 * 1 2 3 22 22 H 1.08995 * 112.84847 * 341.19392 * 3 2 1 23 23 H 1.09004 * 113.61121 * 105.38434 * 4 3 2 24 24 H 1.08998 * 113.69139 * 334.48919 * 4 3 2 25 25 H 1.08994 * 113.61828 * 270.80020 * 5 4 3 26 26 H 1.00896 * 111.00309 * 32.57531 * 6 5 4 27 27 H 1.09000 * 109.47499 * 180.02562 * 9 7 6 28 28 H 1.09011 * 109.46887 * 299.99666 * 9 7 6 29 29 H 1.08999 * 109.47708 * 59.99506 * 9 7 6 30 30 H 0.97004 * 120.00261 * 180.02562 * 13 12 10 31 31 H 1.09000 * 113.61582 * 89.15567 * 18 5 4 32 32 H 1.09007 * 113.61203 * 220.05664 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3756 1.3717 -0.7046 5 6 3.8221 2.3197 0.4209 6 7 5.1968 2.0810 0.8807 7 6 5.7593 3.2853 1.5061 8 1 5.3841 4.1705 0.9926 9 6 5.3457 3.3360 2.9783 10 6 7.2626 3.2468 1.4079 11 1 7.7512 2.4115 0.9283 12 6 8.0141 4.2781 1.9301 13 7 7.4191 5.2954 2.5136 14 14 9.8775 4.2308 1.8077 15 1 10.2787 4.1824 0.3787 16 1 10.4463 5.4481 2.4400 17 1 10.3890 3.0245 2.5065 18 6 2.7531 1.6532 1.3028 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.3139 2.0788 -0.3238 23 1 3.3382 1.8456 -1.6855 24 1 3.9105 0.4220 -0.7134 25 1 3.6223 3.3706 0.2116 26 1 5.7810 1.7605 0.1230 27 1 5.7626 4.2299 3.4423 28 1 4.2582 3.3638 3.0494 29 1 5.7208 2.4509 3.4919 30 1 7.9479 6.0211 2.8807 31 1 3.1164 0.7800 1.8447 32 1 2.2138 2.3540 1.9402 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230696734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:52 Heat of formation + Delta-G solvation = -28.443976 kcal Electronic energy + Delta-G solvation = -12886.864933 eV Core-core repulsion = 10655.137540 eV Total energy + Delta-G solvation = -2231.727392 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.14254 -36.42072 -34.30410 -31.66379 -27.98426 -26.63741 -25.38493 -24.98437 -22.71434 -19.82069 -19.24873 -16.71402 -16.28210 -15.34389 -15.06038 -14.79268 -14.27855 -13.75653 -13.28588 -12.52713 -12.00295 -11.95184 -11.65588 -11.36546 -11.06966 -10.90281 -10.77814 -10.58792 -10.26285 -10.16957 -10.02556 -9.70640 -9.24929 -8.77683 -8.44382 -7.26572 -6.00392 -4.06941 3.32648 3.36887 3.39928 3.92884 4.42418 4.90101 5.00707 5.07705 5.29158 5.29914 5.38545 5.41474 5.47704 5.62199 5.86484 6.04916 6.21540 6.36552 6.58789 6.64299 6.94045 7.20097 7.28414 7.40268 7.56867 7.80901 7.93179 8.30426 8.44245 8.71120 9.04179 9.58954 11.05781 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.086595 B = 0.006788 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.265107 B = 4123.859198 C = 4290.270558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.057 3.943 4 C -0.140 4.140 5 C 0.067 3.933 6 N -0.674 5.674 7 C 0.210 3.790 8 H 0.001 0.999 9 C -0.123 4.123 10 C -0.519 4.519 11 H 0.059 0.941 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.137 4.137 19 H 0.080 0.920 20 H 0.039 0.961 21 H 0.037 0.963 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.333 0.667 27 H 0.078 0.922 28 H 0.005 0.995 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.094 0.906 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 -5.639 -4.562 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C -0.001 4.001 4 C -0.178 4.178 5 C -0.044 4.044 6 N -0.305 5.305 7 C 0.103 3.897 8 H 0.018 0.982 9 C -0.181 4.181 10 C -0.558 4.558 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.176 4.176 19 H 0.099 0.901 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.099 0.901 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.082 0.918 26 H 0.151 0.849 27 H 0.097 0.903 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.467 -5.893 -3.866 12.619 hybrid contribution 0.905 0.880 -0.742 1.464 sum -9.562 -5.013 -4.608 11.739 Atomic orbital electron populations 1.22727 0.81983 1.02235 0.99640 1.87949 1.18958 1.28043 1.94693 1.23715 0.93531 0.84350 0.98485 1.23490 0.95368 1.01137 0.97774 1.22682 0.91748 0.96204 0.93777 1.60793 1.00490 1.36165 1.33050 1.19180 0.93527 0.85167 0.91834 0.98178 1.21695 0.95652 1.01799 0.98964 1.21261 0.91075 1.05694 1.37779 0.92284 1.24920 0.98698 0.95314 0.95064 1.69889 1.35327 1.09324 1.38418 0.86582 0.85350 0.77350 0.78225 1.20351 1.21327 1.20190 1.23602 0.96644 1.01160 0.96215 0.90108 0.94221 0.94434 0.90126 0.91750 0.88761 0.91801 0.84853 0.90291 0.97625 0.95074 0.92907 0.88785 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 101.05 1.10 1.42 16 2 O -0.38 -5.55 10.72 -35.23 -0.38 -5.93 16 3 C 0.06 0.83 4.31 -25.83 -0.11 0.72 16 4 C -0.14 -2.15 7.50 -25.92 -0.19 -2.34 16 5 C 0.07 1.23 3.94 -66.90 -0.26 0.97 16 6 N -0.67 -14.69 6.35 -100.10 -0.64 -15.33 16 7 C 0.21 5.42 2.60 -68.86 -0.18 5.24 16 8 H 0.00 0.02 7.47 -51.93 -0.39 -0.37 16 9 C -0.12 -3.13 9.19 37.16 0.34 -2.78 16 10 C -0.52 -14.43 8.59 -34.44 -0.30 -14.72 16 11 H 0.06 1.61 7.62 -52.48 -0.40 1.21 16 12 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 13 N -0.89 -25.70 11.32 55.43 0.63 -25.07 16 14 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.14 -2.31 7.60 -25.83 -0.20 -2.51 16 19 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 20 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 22 H 0.08 1.02 7.87 -51.93 -0.41 0.61 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 25 H 0.06 1.22 7.49 -51.93 -0.39 0.83 16 26 H 0.33 7.07 8.06 -39.29 -0.32 6.75 16 27 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 28 H 0.00 0.11 7.94 -51.92 -0.41 -0.30 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 265.09 15.07 3.99 3.99 Total: -1.00 -29.19 265.09 -6.46 -35.65 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.15 Total: 2.65 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 0.10 Total: -12.37 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.01 Total: -40.40 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.38 Total: -5.93 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.19 -6.46 -35.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230696734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.203 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds