Wall clock time and date at job start Mon Mar 30 2020 02:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.32570 * 121.64537 * 115.02843 * 11 10 9 13 13 S 1.77226 * 105.31655 * 179.97438 * 12 11 10 14 14 C 1.72206 * 94.85182 * 359.97438 * 13 12 11 15 15 O 1.21827 * 127.06313 * 180.02562 * 14 13 12 16 16 N 1.34248 * 105.88025 * 359.76730 * 14 13 12 17 17 H 0.97000 * 121.38208 * 180.22401 * 16 14 13 18 18 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 19 19 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 20 20 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 21 21 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 22 22 H 1.07999 * 127.33992 * 359.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.9898 -5.6462 -1.0058 13 16 -0.2754 -6.8000 -0.5486 14 6 -0.5952 -6.0685 0.9771 15 8 -1.4125 -6.4271 1.8064 16 7 0.2449 -5.0253 1.0677 17 1 0.2559 -4.4520 1.8501 18 1 -0.4850 0.8401 -0.0004 19 1 0.3555 -2.3880 0.0005 20 1 2.6849 -3.7190 -0.8822 21 1 2.6842 -3.7101 0.8977 22 1 1.5658 -5.6335 -1.9193 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231702310.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:50 Heat of formation + Delta-G solvation = -19.795016 kcal Electronic energy + Delta-G solvation = -10387.217287 eV Core-core repulsion = 8261.525713 eV Total energy + Delta-G solvation = -2125.691574 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.59954 -38.74243 -36.28473 -33.38735 -31.47021 -28.11775 -25.56538 -24.17747 -22.07750 -19.57484 -18.84724 -18.60906 -17.10599 -16.63875 -16.12047 -15.54312 -15.20805 -15.14742 -14.23733 -13.93381 -13.30224 -12.91680 -12.75413 -12.22492 -12.02418 -11.81475 -11.29915 -10.99906 -10.84157 -9.12165 -8.98977 -7.97428 -5.28974 -0.06953 0.34976 0.80386 1.14451 1.51229 1.51622 1.60131 2.01431 2.56584 3.38533 3.79038 4.03959 4.27861 4.63145 4.82943 4.85869 5.27112 5.50397 5.68564 6.21806 6.31425 7.30002 7.98064 8.20993 9.25412 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.070799 B = 0.007901 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.388816 B = 3542.885035 C = 3727.917778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.245 4.245 8 H 0.088 0.912 9 N -0.745 5.745 10 C 0.205 3.795 11 C 0.089 3.911 12 C -0.208 4.208 13 S 0.040 5.960 14 C 0.460 3.540 15 O -0.528 6.528 16 N -0.632 5.632 17 H 0.419 0.581 18 H 0.251 0.749 19 H 0.373 0.627 20 H 0.077 0.923 21 H 0.051 0.949 22 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.803 -10.867 -2.572 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.376 4.376 8 H 0.106 0.894 9 N -0.389 5.389 10 C 0.077 3.923 11 C -0.022 4.022 12 C -0.346 4.346 13 S 0.279 5.721 14 C 0.143 3.857 15 O -0.413 6.413 16 N -0.272 5.272 17 H 0.257 0.743 18 H 0.059 0.941 19 H 0.205 0.795 20 H 0.095 0.905 21 H 0.068 0.932 22 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.943 -12.148 -2.770 13.069 hybrid contribution 0.230 2.460 1.192 2.744 sum 4.173 -9.688 -1.578 10.666 Atomic orbital electron populations 1.69828 1.06820 1.26188 1.59196 1.25607 0.96294 1.01331 1.03401 0.85113 0.77737 0.79273 0.77428 1.21346 1.22835 1.19015 1.19660 0.91912 0.84569 1.41498 0.89377 1.42531 1.05641 1.00729 1.89954 1.19785 0.90708 0.80101 1.01711 1.19842 0.95073 0.99120 0.88207 1.25472 1.05863 0.99039 1.04259 1.84771 1.39633 1.34379 1.13298 1.21984 0.84530 0.84825 0.94351 1.90934 1.37160 1.66868 1.46377 1.44004 1.33822 1.28613 1.20754 0.74264 0.94059 0.79496 0.90486 0.93159 0.75770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.42 13.06 21.65 0.28 -57.14 14 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 14 3 Si 0.98 43.84 29.55 68.60 2.03 45.86 14 4 H -0.29 -12.68 7.11 99.48 0.71 -11.97 14 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 14 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 14 7 C -0.25 -12.49 9.99 84.03 0.84 -11.65 14 8 H 0.09 4.17 7.83 -2.91 -0.02 4.15 14 9 N -0.74 -33.88 5.59 -347.18 -1.94 -35.82 14 10 C 0.21 6.70 6.70 85.63 0.57 7.27 14 11 C 0.09 2.57 6.13 40.71 0.25 2.82 14 12 C -0.21 -4.88 11.18 66.67 0.75 -4.14 14 13 S 0.04 1.02 22.96 -56.49 -1.30 -0.27 14 14 C 0.46 15.28 8.85 129.87 1.15 16.43 14 15 O -0.53 -20.91 18.06 -4.75 -0.09 -20.99 14 16 N -0.63 -19.73 5.41 -313.42 -1.70 -21.42 14 17 H 0.42 13.21 8.93 -92.71 -0.83 12.39 14 18 H 0.25 14.53 8.31 -92.71 -0.77 13.76 14 19 H 0.37 18.80 7.66 -92.71 -0.71 18.09 14 20 H 0.08 2.23 7.99 -2.38 -0.02 2.21 14 21 H 0.05 1.58 8.14 -2.39 -0.02 1.57 14 22 H 0.23 3.68 8.06 -2.91 -0.02 3.66 14 Total: -1.00 -63.44 221.24 1.04 -62.40 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.27 Total: 20.21 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 4.02 Total: 7.18 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -3.36 Total: -114.38 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.09 Total: -20.99 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -1.30 Total: -0.27 kcal Total: -63.44 1.04 -62.40 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231702310.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.601 kcal (2) G-P(sol) polarization free energy of solvation -63.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds