Wall clock time and date at job start Mon Mar 30 2020 01:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99898 * 2 1 4 4 H 1.08996 * 110.28842 * 30.67050 * 3 2 1 5 5 C 1.54259 * 110.32273 * 268.54736 * 3 2 1 6 6 C 1.54386 * 105.15033 * 241.05393 * 5 3 2 7 7 N 1.48718 * 104.51543 * 336.27172 * 6 5 3 8 8 C 1.46897 * 111.01898 * 158.96649 * 7 6 5 9 9 H 1.09001 * 109.46907 * 301.09441 * 8 7 6 10 10 C 1.53001 * 109.47011 * 61.09025 * 8 7 6 11 11 C 1.50700 * 109.47334 * 181.08898 * 8 7 6 12 12 H 1.08000 * 120.00080 * 0.02562 * 11 8 7 13 13 C 1.37876 * 119.99638 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99849 * 180.02562 * 13 11 8 15 15 Si 1.86799 * 120.00242 * 0.02562 * 13 11 8 16 16 H 1.48506 * 109.46895 * 89.99775 * 15 13 11 17 17 H 1.48498 * 109.47182 * 209.99289 * 15 13 11 18 18 H 1.48497 * 109.47150 * 329.99539 * 15 13 11 19 19 C 1.48560 * 104.29154 * 39.35844 * 7 6 5 20 20 H 1.08994 * 109.47210 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46681 * 300.00079 * 1 2 3 22 22 H 1.09001 * 109.46877 * 59.99824 * 1 2 3 23 23 H 1.08997 * 110.32525 * 359.97438 * 5 3 2 24 24 H 1.09001 * 110.32675 * 122.10712 * 5 3 2 25 25 H 1.08999 * 110.41118 * 94.97513 * 6 5 3 26 26 H 1.08997 * 110.41293 * 217.41848 * 6 5 3 27 27 H 1.09004 * 109.47196 * 65.56328 * 10 8 7 28 28 H 1.08996 * 109.47128 * 185.56343 * 10 8 7 29 29 H 1.09006 * 109.47078 * 305.56461 * 10 8 7 30 30 H 0.96999 * 120.00430 * 180.02562 * 14 13 11 31 31 H 1.08992 * 110.41637 * 201.79331 * 19 7 6 32 32 H 1.09001 * 110.51022 * 79.40091 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3607 2.0084 0.5215 5 6 2.2617 1.7800 -1.4461 6 6 3.7876 1.9944 -1.5409 7 7 4.2195 2.2258 -0.1367 8 6 5.6545 1.9563 0.0244 9 1 5.8641 0.9242 -0.2567 10 6 6.4549 2.9020 -0.8733 11 6 6.0484 2.1753 1.4624 12 1 5.3068 2.4834 2.1846 13 6 7.3554 1.9812 1.8563 14 7 7.6991 2.1718 3.1113 15 14 8.6379 1.4476 0.6074 16 1 9.2618 2.6479 -0.0051 17 1 9.6823 0.6384 1.2853 18 1 7.9892 0.6323 -0.4507 19 6 3.4058 1.2711 0.6592 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.9422 1.0170 -2.1559 24 1 1.7355 2.7159 -1.6344 25 1 4.2719 1.1057 -1.9455 26 1 4.0117 2.8647 -2.1577 27 1 6.3227 3.9280 -0.5297 28 1 7.5114 2.6374 -0.8293 29 1 6.1009 2.8143 -1.9005 30 1 8.6186 2.0357 3.3885 31 1 3.3440 1.5976 1.6973 32 1 3.8288 0.2682 0.6016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234837740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:36 Heat of formation + Delta-G solvation = -33.112991 kcal Electronic energy + Delta-G solvation = -13321.850541 eV Core-core repulsion = 11089.920685 eV Total energy + Delta-G solvation = -2231.929856 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.95321 -36.69281 -33.43441 -31.32949 -28.70383 -27.94140 -26.02166 -24.87558 -21.86383 -20.27741 -19.46809 -16.88280 -16.43511 -15.66483 -14.93604 -14.77842 -14.25167 -13.59420 -13.13625 -12.88825 -12.39183 -12.22364 -12.02566 -11.63285 -11.38509 -11.03268 -10.83033 -10.66623 -10.40689 -10.15988 -10.11107 -9.47947 -9.35870 -9.05722 -8.54927 -7.54608 -6.05530 -4.04030 3.27956 3.37581 3.39712 3.90434 4.41189 4.94937 5.05029 5.08505 5.25835 5.35984 5.40856 5.42807 5.65616 5.68549 6.00462 6.14817 6.21612 6.26754 6.33753 6.41299 6.46853 6.52172 6.74144 6.79849 7.17580 7.40766 7.57117 7.88663 7.94463 8.64428 9.01205 9.56509 11.07547 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051988 B = 0.009704 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.457818 B = 2884.705033 C = 3164.390005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.079 3.921 4 H 0.068 0.932 5 C -0.145 4.145 6 C 0.030 3.970 7 N -0.493 5.493 8 C 0.172 3.828 9 H 0.001 0.999 10 C -0.145 4.145 11 C -0.505 4.505 12 H 0.081 0.919 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.886 3.114 16 H -0.278 1.278 17 H -0.297 1.297 18 H -0.269 1.269 19 C 0.055 3.945 20 H 0.080 0.920 21 H 0.040 0.960 22 H 0.037 0.963 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.089 0.911 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.668 -1.969 -8.464 13.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.021 3.979 4 H 0.086 0.914 5 C -0.183 4.183 6 C -0.099 4.099 7 N -0.218 5.218 8 C 0.064 3.936 9 H 0.019 0.981 10 C -0.202 4.202 11 C -0.543 4.543 12 H 0.099 0.901 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.224 1.224 18 H -0.195 1.195 19 C -0.074 4.074 20 H 0.099 0.901 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.473 -1.587 -8.156 13.369 hybrid contribution 0.818 -0.845 -0.887 1.473 sum -9.655 -2.433 -9.043 13.450 Atomic orbital electron populations 1.22720 0.81849 1.02192 0.99697 1.87949 1.19042 1.28384 1.94945 1.23060 0.95790 0.83573 0.95513 0.91396 1.22826 0.97300 1.00980 0.97217 1.23072 0.93650 0.99729 0.93420 1.65408 1.06201 1.47127 1.03082 1.19894 0.83570 0.93098 0.97027 0.98136 1.22162 0.98690 1.01936 0.97429 1.20935 0.95523 1.46024 0.91787 0.90073 1.24913 0.98227 0.94917 0.95088 1.69878 1.18496 1.49619 1.15777 0.86883 0.81488 0.78631 0.81361 1.20517 1.22412 1.19486 1.22873 0.89704 0.96067 0.98715 0.90097 0.94149 0.94449 0.91185 0.91232 0.94519 0.90700 0.91965 0.94158 0.95106 0.92626 0.89299 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.87 101.05 1.10 1.47 16 2 O -0.38 -6.14 10.31 -35.23 -0.36 -6.50 16 3 C 0.08 1.29 3.52 -25.35 -0.09 1.20 16 4 H 0.07 1.01 7.84 -51.93 -0.41 0.61 16 5 C -0.14 -2.17 6.80 -25.35 -0.17 -2.34 16 6 C 0.03 0.53 5.40 -2.09 -0.01 0.51 16 7 N -0.49 -10.57 5.19 -223.27 -1.16 -11.73 16 8 C 0.17 4.20 1.42 -68.87 -0.10 4.10 16 9 H 0.00 0.03 7.04 -51.93 -0.37 -0.34 16 10 C -0.14 -3.25 8.60 37.16 0.32 -2.93 16 11 C -0.50 -14.37 8.72 -34.44 -0.30 -14.67 16 12 H 0.08 2.51 7.41 -52.49 -0.39 2.12 16 13 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 14 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 15 Si 0.89 22.28 24.32 -169.99 -4.13 18.14 16 16 H -0.28 -6.80 6.92 56.52 0.39 -6.40 16 17 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 19 C 0.05 1.11 5.52 -2.18 -0.01 1.09 16 20 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.04 0.42 8.10 -51.93 -0.42 0.00 16 22 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.66 7.96 -51.93 -0.41 0.25 16 26 H 0.07 1.23 7.55 -51.93 -0.39 0.84 16 27 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.04 0.93 3.44 -51.93 -0.18 0.75 16 29 H 0.03 0.59 6.70 -51.93 -0.35 0.24 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 32 H 0.05 1.11 7.86 -51.93 -0.41 0.70 16 LS Contribution 250.97 15.07 3.78 3.78 Total: -1.00 -30.74 250.97 -5.46 -36.20 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -5.00 Total: -3.35 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 0.64 Total: -9.62 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.38 Total: -38.65 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.36 Total: -6.50 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.13 Total: 18.14 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.74 -5.46 -36.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234837740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.089 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds