Wall clock time and date at job start Mon Mar 30 2020 01:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99898 * 2 1 4 4 H 1.08996 * 110.28842 * 30.67050 * 3 2 1 5 5 C 1.54259 * 110.32273 * 268.54736 * 3 2 1 6 6 C 1.54386 * 105.15033 * 241.05393 * 5 3 2 7 7 N 1.48718 * 104.51543 * 336.27172 * 6 5 3 8 8 C 1.46897 * 111.01898 * 158.96649 * 7 6 5 9 9 H 1.09001 * 109.46907 * 301.09441 * 8 7 6 10 10 C 1.53001 * 109.47011 * 61.09025 * 8 7 6 11 11 C 1.50700 * 109.47334 * 181.08898 * 8 7 6 12 12 H 1.08000 * 120.00080 * 0.02562 * 11 8 7 13 13 C 1.37876 * 119.99638 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99849 * 180.02562 * 13 11 8 15 15 Si 1.86799 * 120.00242 * 0.02562 * 13 11 8 16 16 H 1.48506 * 109.46895 * 89.99775 * 15 13 11 17 17 H 1.48498 * 109.47182 * 209.99289 * 15 13 11 18 18 H 1.48497 * 109.47150 * 329.99539 * 15 13 11 19 19 C 1.48560 * 104.29154 * 39.35844 * 7 6 5 20 20 H 1.08994 * 109.47210 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46681 * 300.00079 * 1 2 3 22 22 H 1.09001 * 109.46877 * 59.99824 * 1 2 3 23 23 H 1.08997 * 110.32525 * 359.97438 * 5 3 2 24 24 H 1.09001 * 110.32675 * 122.10712 * 5 3 2 25 25 H 1.08999 * 110.41118 * 94.97513 * 6 5 3 26 26 H 1.08997 * 110.41293 * 217.41848 * 6 5 3 27 27 H 1.09004 * 109.47196 * 65.56328 * 10 8 7 28 28 H 1.08996 * 109.47128 * 185.56343 * 10 8 7 29 29 H 1.09006 * 109.47078 * 305.56461 * 10 8 7 30 30 H 0.96999 * 120.00430 * 180.02562 * 14 13 11 31 31 H 1.08992 * 110.41637 * 201.79331 * 19 7 6 32 32 H 1.09001 * 110.51022 * 79.40091 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3607 2.0084 0.5215 5 6 2.2617 1.7800 -1.4461 6 6 3.7876 1.9944 -1.5409 7 7 4.2195 2.2258 -0.1367 8 6 5.6545 1.9563 0.0244 9 1 5.8641 0.9242 -0.2567 10 6 6.4549 2.9020 -0.8733 11 6 6.0484 2.1753 1.4624 12 1 5.3068 2.4834 2.1846 13 6 7.3554 1.9812 1.8563 14 7 7.6991 2.1718 3.1113 15 14 8.6379 1.4476 0.6074 16 1 9.2618 2.6479 -0.0051 17 1 9.6823 0.6384 1.2853 18 1 7.9892 0.6323 -0.4507 19 6 3.4058 1.2711 0.6592 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.9422 1.0170 -2.1559 24 1 1.7355 2.7159 -1.6344 25 1 4.2719 1.1057 -1.9455 26 1 4.0117 2.8647 -2.1577 27 1 6.3227 3.9280 -0.5297 28 1 7.5114 2.6374 -0.8293 29 1 6.1009 2.8143 -1.9005 30 1 8.6186 2.0357 3.3885 31 1 3.3440 1.5976 1.6973 32 1 3.8288 0.2682 0.6016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234837740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:36 Heat of formation + Delta-G solvation = -56.892020 kcal Electronic energy + Delta-G solvation = -13322.881677 eV Core-core repulsion = 11089.920685 eV Total energy + Delta-G solvation = -2232.960992 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.36706 -38.09617 -35.31975 -33.27937 -30.18767 -29.39761 -27.29692 -26.71508 -23.52434 -21.68096 -21.18593 -18.89928 -17.77695 -17.30526 -16.55660 -16.14654 -15.55570 -15.05799 -14.95287 -14.57393 -14.23491 -13.81815 -13.69709 -12.89109 -12.72655 -12.54482 -12.48823 -12.29602 -12.07374 -12.06114 -11.51474 -11.37467 -11.11041 -10.75119 -10.51792 -9.26258 -8.30824 -6.34369 1.28095 1.33399 1.43294 2.29791 2.69711 3.03640 3.45594 3.70196 3.78778 4.08964 4.35073 4.49087 4.51546 4.57842 4.63880 4.65541 4.70385 4.78056 4.86767 4.88773 4.96829 4.98410 5.12547 5.12767 5.37914 5.61876 5.93376 6.08003 6.34527 6.59166 6.70935 7.30379 8.86012 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051988 B = 0.009704 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.457818 B = 2884.705033 C = 3164.390005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.088 3.912 4 H 0.083 0.917 5 C -0.133 4.133 6 C 0.026 3.974 7 N -0.507 5.507 8 C 0.175 3.825 9 H -0.011 1.011 10 C -0.140 4.140 11 C -0.510 4.510 12 H 0.038 0.962 13 C 0.012 3.988 14 N -0.947 5.947 15 Si 0.949 3.051 16 H -0.261 1.261 17 H -0.296 1.296 18 H -0.255 1.255 19 C 0.051 3.949 20 H 0.097 0.903 21 H 0.047 0.953 22 H 0.056 0.944 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.033 0.967 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.267 0.733 31 H 0.062 0.938 32 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.536 -1.973 -11.187 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.030 3.970 4 H 0.101 0.899 5 C -0.171 4.171 6 C -0.102 4.102 7 N -0.232 5.232 8 C 0.066 3.934 9 H 0.006 0.994 10 C -0.197 4.197 11 C -0.548 4.548 12 H 0.056 0.944 13 C -0.185 4.185 14 N -0.587 5.587 15 Si 0.776 3.224 16 H -0.186 1.186 17 H -0.224 1.224 18 H -0.180 1.180 19 C -0.077 4.077 20 H 0.116 0.884 21 H 0.066 0.934 22 H 0.075 0.925 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.051 0.949 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -11.373 -1.586 -10.899 15.832 hybrid contribution 0.957 -0.860 0.046 1.287 sum -10.416 -2.447 -10.853 15.240 Atomic orbital electron populations 1.22985 0.79296 1.03818 1.01011 1.87907 1.21785 1.28022 1.95148 1.22867 0.93462 0.84381 0.96303 0.89950 1.22796 0.95330 1.02716 0.96272 1.23227 0.95596 1.00413 0.90953 1.65303 1.04516 1.47475 1.05871 1.19724 0.86047 0.92920 0.94694 0.99402 1.22055 0.98021 1.00729 0.98926 1.21175 0.94796 1.45195 0.93618 0.94382 1.25782 1.00624 0.95038 0.97043 1.70029 1.19228 1.51422 1.18071 0.85845 0.78520 0.78958 0.79050 1.18618 1.22362 1.17952 1.22801 0.92573 0.94329 0.98044 0.88442 0.93389 0.92522 0.89463 0.88698 0.94875 0.88807 0.92510 0.94593 0.91472 0.92441 0.91964 0.95450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.87 113.37 1.23 1.73 16 2 O -0.41 -12.35 10.31 -148.98 -1.54 -13.88 16 3 C 0.09 2.73 3.52 31.49 0.11 2.84 16 4 H 0.08 2.29 7.84 -2.39 -0.02 2.27 16 5 C -0.13 -3.52 6.80 31.49 0.21 -3.30 16 6 C 0.03 0.84 5.40 86.42 0.47 1.31 16 7 N -0.51 -21.47 5.19 -860.30 -4.46 -25.93 16 8 C 0.17 8.50 1.42 44.17 0.06 8.56 16 9 H -0.01 -0.58 7.04 -2.39 -0.02 -0.60 16 10 C -0.14 -5.98 8.60 71.98 0.62 -5.36 16 11 C -0.51 -30.00 8.72 25.60 0.22 -29.78 16 12 H 0.04 2.50 7.41 -2.91 -0.02 2.47 16 13 C 0.01 0.74 5.45 84.65 0.46 1.20 16 14 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 15 Si 0.95 45.80 24.32 68.60 1.67 47.47 16 16 H -0.26 -11.78 6.92 99.48 0.69 -11.09 16 17 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 18 H -0.26 -11.62 6.53 99.48 0.65 -10.97 16 19 C 0.05 2.11 5.52 86.45 0.48 2.59 16 20 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.09 2.05 7.98 -2.39 -0.02 2.03 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.03 1.11 7.96 -2.39 -0.02 1.09 16 26 H 0.09 2.70 7.55 -2.39 -0.02 2.68 16 27 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.04 1.55 3.44 -2.39 -0.01 1.54 16 29 H 0.07 2.36 6.70 -2.38 -0.02 2.34 16 30 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.06 2.81 7.58 -2.39 -0.02 2.80 16 32 H 0.03 1.23 7.86 -2.39 -0.02 1.21 16 Total: -1.00 -68.09 250.97 0.84 -67.25 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: 1.00 Total: 5.23 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 3.87 Total: -20.21 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -4.16 Total: -85.86 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -1.54 Total: -13.88 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.67 Total: 47.47 kcal Total: -68.09 0.84 -67.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234837740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.355 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds