Wall clock time and date at job start Mon Mar 30 2020 02:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30494 * 1 3 3 Si 1.86794 * 120.00194 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00054 * 3 2 1 5 5 H 1.48501 * 109.46931 * 29.99927 * 3 2 1 6 6 H 1.48503 * 109.47412 * 149.99621 * 3 2 1 7 7 C 1.40409 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99984 * 0.27842 * 7 2 1 10 10 O 1.22103 * 120.00255 * 359.72359 * 9 7 2 11 11 C 1.46456 * 120.00083 * 179.71848 * 9 7 2 12 12 C 1.38606 * 126.09125 * 179.97438 * 11 9 7 13 13 C 1.39690 * 106.57821 * 179.97438 * 12 11 9 14 14 C 1.36074 * 107.21338 * 0.02562 * 13 12 11 15 15 Cl 1.73604 * 125.51174 * 179.97438 * 14 13 12 16 16 O 1.34000 * 108.97943 * 359.75123 * 14 13 12 17 17 H 0.96996 * 120.00224 * 0.02562 * 1 2 3 18 18 H 1.08000 * 126.70873 * 359.97123 * 12 11 9 19 19 H 1.08002 * 126.39247 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 2.4865 2.0463 -1.4001 5 1 1.4364 2.6526 0.7000 6 1 3.5365 1.4401 0.7001 7 6 2.0070 -1.2160 0.0005 8 1 3.0870 -1.2159 0.0001 9 6 1.3004 -2.4398 -0.0049 10 8 0.0793 -2.4399 -0.0049 11 6 2.0326 -3.7082 -0.0105 12 6 1.4708 -4.9753 -0.0156 13 6 2.5332 -5.8823 -0.0205 14 6 3.6834 -5.1552 -0.0177 15 17 5.2909 -5.8109 -0.0211 16 8 3.3747 -3.8512 -0.0168 17 1 -0.4850 0.8400 -0.0004 18 1 0.4176 -5.2145 -0.0157 19 1 2.4561 -6.9595 -0.0256 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236042461.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:08 Heat of formation + Delta-G solvation = -36.700925 kcal Electronic energy + Delta-G solvation = -10247.132194 eV Core-core repulsion = 7950.537973 eV Total energy + Delta-G solvation = -2296.594221 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 200.003 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.71128 -36.75079 -36.49971 -32.99471 -32.32113 -28.97976 -26.81087 -22.42646 -21.09764 -19.58780 -17.49379 -16.37407 -15.62292 -15.48083 -14.08352 -13.19568 -12.84326 -12.59522 -12.30751 -12.22258 -11.64777 -11.41418 -11.08200 -10.99321 -10.61553 -10.45064 -9.39545 -9.14158 -7.87737 -7.64280 -6.55654 -5.13798 1.66910 1.89822 2.88906 3.04937 3.06123 3.11131 3.88961 4.21336 4.25450 5.40254 5.49535 5.65985 6.19350 6.36413 6.57726 6.98839 7.09184 7.51377 7.88689 8.54831 8.58341 10.03247 10.25398 Molecular weight = 200.00amu Principal moments of inertia in cm(-1) A = 0.051877 B = 0.009865 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.607229 B = 2837.633232 C = 3367.395706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.076 3.924 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.495 4.495 8 H 0.080 0.920 9 C 0.412 3.588 10 O -0.523 6.523 11 C 0.008 3.992 12 C -0.201 4.201 13 C -0.174 4.174 14 C -0.012 4.012 15 Cl -0.002 7.002 16 O -0.147 6.147 17 H 0.280 0.720 18 H 0.155 0.845 19 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.710 -5.295 -0.033 8.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.525 4.525 8 H 0.098 0.902 9 C 0.308 3.692 10 O -0.413 6.413 11 C -0.045 4.045 12 C -0.221 4.221 13 C -0.194 4.194 14 C -0.089 4.089 15 Cl 0.027 6.973 16 O -0.043 6.043 17 H 0.091 0.909 18 H 0.173 0.827 19 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.311 -5.072 -0.030 8.097 hybrid contribution 0.745 0.358 -0.015 0.827 sum 7.057 -4.714 -0.045 8.487 Atomic orbital electron populations 1.69920 1.07717 1.28883 1.28687 1.26084 0.94778 1.01437 0.92651 0.86205 0.80474 0.79960 0.79492 1.19081 1.19863 1.18215 1.20970 0.95463 0.91227 1.44877 0.90177 1.17073 0.87743 0.83173 0.81171 1.90682 1.13257 1.86022 1.51369 1.25978 0.77163 1.00207 1.01179 1.22133 1.00084 0.90953 1.08929 1.21297 0.89923 1.00238 1.07956 1.22765 0.87547 0.83587 1.15014 1.98359 1.20309 1.81200 1.97447 1.84085 1.26311 1.24173 1.69700 0.90923 0.82725 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -20.12 11.72 55.57 0.65 -19.47 13 2 C 0.08 1.98 5.50 -17.30 -0.10 1.89 13 3 Si 0.92 18.83 29.56 -169.99 -5.03 13.81 13 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 13 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 13 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 13 7 C -0.50 -13.68 9.13 -37.59 -0.34 -14.02 13 8 H 0.08 2.08 7.71 -52.49 -0.40 1.68 13 9 C 0.41 11.74 6.88 -35.10 -0.24 11.50 13 10 O -0.52 -16.37 15.42 4.82 0.07 -16.29 13 11 C 0.01 0.19 7.09 -36.14 -0.26 -0.07 13 12 C -0.20 -4.31 10.71 -38.90 -0.42 -4.73 13 13 C -0.17 -3.17 10.84 -39.82 -0.43 -3.60 13 14 C -0.01 -0.23 7.94 29.95 0.24 0.01 13 15 Cl 0.00 -0.02 29.30 -51.86 -1.52 -1.54 13 16 O -0.15 -3.35 10.40 4.64 0.05 -3.31 13 17 H 0.28 6.87 8.29 -40.82 -0.34 6.53 13 18 H 0.16 3.14 8.06 -52.49 -0.42 2.72 13 19 H 0.15 2.17 8.06 -52.49 -0.42 1.75 13 LS Contribution 207.94 15.07 3.13 3.13 Total: -1.00 -30.19 207.94 -4.57 -34.76 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: -0.38 Total: -2.08 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -1.55 Total: -9.02 kcal Atomic # 7 Polarization: -20.12 SS G_CDS: 0.65 Total: -19.47 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.12 Total: -19.60 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.52 Total: -1.54 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -30.19 -4.57 -34.76 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236042461.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.939 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds