Wall clock time and date at job start Mon Mar 30 2020 02:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30494 * 1 3 3 Si 1.86794 * 120.00194 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00054 * 3 2 1 5 5 H 1.48501 * 109.46931 * 29.99927 * 3 2 1 6 6 H 1.48503 * 109.47412 * 149.99621 * 3 2 1 7 7 C 1.40409 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99984 * 0.27842 * 7 2 1 10 10 O 1.22103 * 120.00255 * 359.72359 * 9 7 2 11 11 C 1.46456 * 120.00083 * 179.71848 * 9 7 2 12 12 C 1.38606 * 126.09125 * 179.97438 * 11 9 7 13 13 C 1.39690 * 106.57821 * 179.97438 * 12 11 9 14 14 C 1.36074 * 107.21338 * 0.02562 * 13 12 11 15 15 Cl 1.73604 * 125.51174 * 179.97438 * 14 13 12 16 16 O 1.34000 * 108.97943 * 359.75123 * 14 13 12 17 17 H 0.96996 * 120.00224 * 0.02562 * 1 2 3 18 18 H 1.08000 * 126.70873 * 359.97123 * 12 11 9 19 19 H 1.08002 * 126.39247 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 2.4865 2.0463 -1.4001 5 1 1.4364 2.6526 0.7000 6 1 3.5365 1.4401 0.7001 7 6 2.0070 -1.2160 0.0005 8 1 3.0870 -1.2159 0.0001 9 6 1.3004 -2.4398 -0.0049 10 8 0.0793 -2.4399 -0.0049 11 6 2.0326 -3.7082 -0.0105 12 6 1.4708 -4.9753 -0.0156 13 6 2.5332 -5.8823 -0.0205 14 6 3.6834 -5.1552 -0.0177 15 17 5.2909 -5.8109 -0.0211 16 8 3.3747 -3.8512 -0.0168 17 1 -0.4850 0.8400 -0.0004 18 1 0.4176 -5.2145 -0.0157 19 1 2.4561 -6.9595 -0.0256 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236042461.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:08 Heat of formation + Delta-G solvation = -56.560484 kcal Electronic energy + Delta-G solvation = -10247.993369 eV Core-core repulsion = 7950.537973 eV Total energy + Delta-G solvation = -2297.455396 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 200.003 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -43.39504 -38.78353 -37.96818 -35.00513 -34.00868 -30.85328 -28.76165 -24.30162 -22.70956 -21.42275 -19.27775 -18.30645 -17.32744 -17.31451 -15.85174 -15.18352 -14.35411 -14.24977 -14.21216 -13.99530 -13.24434 -13.10416 -12.76876 -12.70013 -12.35018 -12.06319 -11.09479 -10.98359 -10.00550 -9.34424 -8.54001 -7.27867 0.14785 0.16990 1.26028 1.37110 1.45450 1.55250 2.16912 2.29684 2.51990 3.41351 3.90367 3.98077 4.55589 4.77901 4.89103 5.05974 5.36982 5.80030 5.81808 6.51740 6.53681 7.96070 8.29727 Molecular weight = 200.00amu Principal moments of inertia in cm(-1) A = 0.051877 B = 0.009865 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.607229 B = 2837.633232 C = 3367.395706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.024 3.976 3 Si 1.002 2.998 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.251 1.251 7 C -0.525 4.525 8 H 0.087 0.913 9 C 0.392 3.608 10 O -0.573 6.573 11 C -0.046 4.046 12 C -0.185 4.185 13 C -0.162 4.162 14 C -0.006 4.006 15 Cl 0.041 6.959 16 O -0.164 6.164 17 H 0.291 0.709 18 H 0.160 0.840 19 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.540 -5.731 -0.043 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.197 4.197 3 Si 0.819 3.181 4 H -0.178 1.178 5 H -0.183 1.183 6 H -0.174 1.174 7 C -0.554 4.554 8 H 0.105 0.895 9 C 0.292 3.708 10 O -0.467 6.467 11 C -0.098 4.098 12 C -0.205 4.205 13 C -0.182 4.182 14 C -0.083 4.083 15 Cl 0.070 6.930 16 O -0.060 6.060 17 H 0.102 0.898 18 H 0.178 0.822 19 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 8.155 -5.530 -0.042 9.854 hybrid contribution 0.296 0.305 -0.013 0.425 sum 8.451 -5.225 -0.054 9.936 Atomic orbital electron populations 1.70014 1.09872 1.30851 1.29009 1.27308 0.95659 1.05548 0.91156 0.84952 0.78914 0.74076 0.80173 1.17841 1.18314 1.17390 1.21389 0.96034 0.92312 1.45688 0.89465 1.17443 0.87640 0.85220 0.80460 1.90616 1.14887 1.87522 1.53721 1.25114 0.78302 0.99958 1.06448 1.22400 1.01244 0.90537 1.06315 1.21710 0.88077 1.01911 1.06484 1.23372 0.90008 0.82474 1.12475 1.98382 1.17338 1.80168 1.97141 1.84002 1.25371 1.26306 1.70335 0.89808 0.82225 0.78619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.00 11.72 21.90 0.26 -43.74 13 2 C 0.02 1.30 5.50 85.42 0.47 1.77 13 3 Si 1.00 38.42 29.56 68.60 2.03 40.45 13 4 H -0.25 -9.22 7.11 99.48 0.71 -8.52 13 5 H -0.26 -9.25 7.11 99.48 0.71 -8.54 13 6 H -0.25 -9.20 7.11 99.48 0.71 -8.49 13 7 C -0.52 -29.90 9.13 23.56 0.22 -29.68 13 8 H 0.09 4.65 7.71 -2.91 -0.02 4.62 13 9 C 0.39 23.35 6.88 25.17 0.17 23.53 13 10 O -0.57 -37.71 15.42 -5.65 -0.09 -37.80 13 11 C -0.05 -2.33 7.09 24.50 0.17 -2.16 13 12 C -0.19 -7.84 10.71 22.71 0.24 -7.60 13 13 C -0.16 -5.45 10.84 22.12 0.24 -5.21 13 14 C -0.01 -0.22 7.94 67.32 0.53 0.32 13 15 Cl 0.04 1.11 29.30 -2.72 -0.08 1.03 13 16 O -0.16 -7.42 10.40 -6.31 -0.07 -7.49 13 17 H 0.29 14.59 8.29 -92.71 -0.77 13.82 13 18 H 0.16 6.48 8.06 -2.91 -0.02 6.45 13 19 H 0.20 4.69 8.06 -2.91 -0.02 4.67 13 Total: -1.00 -67.94 207.94 5.38 -62.56 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.28 Total: 4.02 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 2.05 Total: -19.03 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.26 Total: -43.74 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -0.15 Total: -45.29 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 17 Polarization: 1.11 SS G_CDS: -0.08 Total: 1.03 kcal Total: -67.94 5.38 -62.56 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236042461.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.000 kcal (2) G-P(sol) polarization free energy of solvation -67.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds