Wall clock time and date at job start Mon Mar 30 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76198 * 100.00103 * 2 1 4 4 C 1.36932 * 125.05175 * 179.97438 * 3 2 1 5 5 C 1.36411 * 114.88391 * 179.97438 * 4 3 2 6 6 C 1.38350 * 114.45127 * 0.02562 * 5 4 3 7 7 C 1.39779 * 125.23012 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99709 * 353.32276 * 7 6 5 9 9 C 1.39789 * 119.99764 * 173.32627 * 7 6 5 10 10 N 1.31093 * 120.00080 * 6.55201 * 9 7 6 11 11 Si 1.86797 * 120.00168 * 186.54969 * 9 7 6 12 12 H 1.48503 * 109.47118 * 94.98573 * 11 9 7 13 13 H 1.48498 * 109.47657 * 214.98854 * 11 9 7 14 14 H 1.48503 * 109.47125 * 334.98862 * 11 9 7 15 15 S 1.75799 * 125.04875 * 0.02562 * 3 2 1 16 16 H 1.08997 * 109.47088 * 60.00354 * 1 2 3 17 17 H 1.09004 * 109.46903 * 179.97438 * 1 2 3 18 18 H 1.08999 * 109.47134 * 299.99750 * 1 2 3 19 19 H 1.08001 * 122.55721 * 0.26790 * 4 3 2 20 20 H 1.07995 * 122.77068 * 180.02562 * 5 4 3 21 21 H 0.97002 * 119.99664 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3565 2.3150 0.0005 5 6 3.3525 3.6791 -0.0002 6 6 2.0914 4.2481 -0.0007 7 6 1.8260 5.6205 -0.0009 8 1 2.6355 6.3270 0.1081 9 6 0.5128 6.0783 -0.1421 10 7 -0.4822 5.2248 -0.1452 11 14 0.1757 7.9064 -0.3262 12 1 0.0743 8.2482 -1.7678 13 1 -1.1001 8.2456 0.3539 14 1 1.2850 8.6787 0.2887 15 16 0.8739 2.9794 0.0006 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 4.2684 1.7364 -0.0033 20 1 4.2589 4.2663 -0.0003 21 1 -1.3935 5.5426 -0.2428 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238411674.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:01 Heat of formation + Delta-G solvation = -0.347816 kcal Electronic energy + Delta-G solvation = -8599.072954 eV Core-core repulsion = 6884.684794 eV Total energy + Delta-G solvation = -1714.388160 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 200.002 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -35.73379 -33.84303 -29.10378 -28.36072 -25.04045 -22.06188 -18.36776 -18.05178 -15.86550 -14.83694 -14.43120 -13.75808 -13.08483 -12.72648 -12.47063 -12.17995 -11.83900 -11.25970 -11.17370 -10.75852 -10.55822 -10.23143 -9.72613 -9.43251 -8.92415 -8.21415 -7.08688 -6.82729 -6.47884 -4.47511 2.48889 2.68067 2.89432 2.95367 3.01553 3.20126 3.65646 3.93875 4.02558 4.06683 4.98181 5.66026 5.73330 6.27293 6.64165 6.80273 7.08171 7.49527 7.68619 7.95134 8.04301 8.45248 8.50504 9.76879 Molecular weight = 200.00amu Principal moments of inertia in cm(-1) A = 0.068240 B = 0.011219 C = 0.009694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.215274 B = 2495.241210 C = 2887.702959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.128 6.128 3 C -0.404 4.404 4 C -0.038 4.038 5 C -0.340 4.340 6 C 0.036 3.964 7 C -0.384 4.384 8 H 0.096 0.904 9 C 0.050 3.950 10 N -0.787 5.787 11 Si 0.937 3.063 12 H -0.265 1.265 13 H -0.273 1.273 14 H -0.258 1.258 15 S 0.156 5.844 16 H 0.077 0.923 17 H 0.089 0.911 18 H 0.077 0.923 19 H 0.095 0.905 20 H 0.103 0.897 21 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 -1.046 -0.157 2.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.105 5.895 3 C -0.630 4.630 4 C -0.072 4.072 5 C -0.366 4.366 6 C -0.086 4.086 7 C -0.420 4.420 8 H 0.114 0.886 9 C -0.170 4.170 10 N -0.414 5.414 11 Si 0.761 3.239 12 H -0.190 1.190 13 H -0.197 1.197 14 H -0.181 1.181 15 S 0.413 5.587 16 H 0.096 0.904 17 H 0.107 0.893 18 H 0.096 0.904 19 H 0.113 0.887 20 H 0.122 0.878 21 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.294 -2.145 -0.165 3.934 hybrid contribution 0.591 1.897 -0.116 1.990 sum -2.702 -0.248 -0.280 2.728 Atomic orbital electron populations 1.23360 0.96824 1.04892 1.05569 1.84221 1.04837 1.04399 1.96061 1.26024 1.02789 0.98114 1.36117 1.19348 0.94173 0.93917 0.99782 1.19641 0.95753 0.93052 1.28185 1.21902 0.94329 0.96385 0.96025 1.19162 0.93675 0.91302 1.37847 0.88632 1.26212 0.95542 1.02193 0.93090 1.68873 1.01470 1.36782 1.34315 0.85770 0.78996 0.79619 0.79549 1.19032 1.19745 1.18133 1.84366 1.06091 0.92388 1.75833 0.90439 0.89256 0.90437 0.88681 0.87849 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.46 101.05 0.96 -1.46 14 2 S -0.13 -2.68 22.88 -107.50 -2.46 -5.14 14 3 C -0.40 -10.08 6.72 30.26 0.20 -9.87 14 4 C -0.04 -0.96 10.16 -40.71 -0.41 -1.38 14 5 C -0.34 -8.89 10.17 -40.20 -0.41 -9.30 14 6 C 0.04 0.98 6.17 -38.96 -0.24 0.74 14 7 C -0.38 -9.84 9.26 -38.43 -0.36 -10.19 14 8 H 0.10 2.31 7.85 -52.49 -0.41 1.90 14 9 C 0.05 1.17 5.49 -17.29 -0.09 1.07 14 10 N -0.79 -19.06 10.67 55.54 0.59 -18.47 14 11 Si 0.94 17.54 29.57 -169.99 -5.03 12.52 14 12 H -0.27 -4.92 7.11 56.52 0.40 -4.52 14 13 H -0.27 -4.96 7.11 56.52 0.40 -4.56 14 14 H -0.26 -4.75 7.11 56.52 0.40 -4.34 14 15 S 0.16 3.98 18.69 -107.50 -2.01 1.97 14 16 H 0.08 1.40 8.00 -51.92 -0.42 0.98 14 17 H 0.09 1.27 8.14 -51.91 -0.42 0.85 14 18 H 0.08 1.39 7.99 -51.92 -0.42 0.98 14 19 H 0.10 2.22 8.06 -52.49 -0.42 1.80 14 20 H 0.10 2.54 8.06 -52.49 -0.42 2.12 14 21 H 0.30 6.44 8.30 -40.82 -0.34 6.11 14 LS Contribution 216.94 15.07 3.27 3.27 Total: -1.00 -27.30 216.94 -7.63 -34.93 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -1.64 Total: 1.31 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: -0.35 Total: -30.39 kcal Atomic # 7 Polarization: -19.06 SS G_CDS: 0.59 Total: -18.47 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.52 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -4.47 Total: -3.18 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -27.30 -7.63 -34.93 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238411674.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.584 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds