Wall clock time and date at job start Mon Mar 30 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76198 * 100.00103 * 2 1 4 4 C 1.36932 * 125.05175 * 179.97438 * 3 2 1 5 5 C 1.36411 * 114.88391 * 179.97438 * 4 3 2 6 6 C 1.38350 * 114.45127 * 0.02562 * 5 4 3 7 7 C 1.39779 * 125.23012 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99709 * 353.32276 * 7 6 5 9 9 C 1.39789 * 119.99764 * 173.32627 * 7 6 5 10 10 N 1.31093 * 120.00080 * 6.55201 * 9 7 6 11 11 Si 1.86797 * 120.00168 * 186.54969 * 9 7 6 12 12 H 1.48503 * 109.47118 * 94.98573 * 11 9 7 13 13 H 1.48498 * 109.47657 * 214.98854 * 11 9 7 14 14 H 1.48503 * 109.47125 * 334.98862 * 11 9 7 15 15 S 1.75799 * 125.04875 * 0.02562 * 3 2 1 16 16 H 1.08997 * 109.47088 * 60.00354 * 1 2 3 17 17 H 1.09004 * 109.46903 * 179.97438 * 1 2 3 18 18 H 1.08999 * 109.47134 * 299.99750 * 1 2 3 19 19 H 1.08001 * 122.55721 * 0.26790 * 4 3 2 20 20 H 1.07995 * 122.77068 * 180.02562 * 5 4 3 21 21 H 0.97002 * 119.99664 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3565 2.3150 0.0005 5 6 3.3525 3.6791 -0.0002 6 6 2.0914 4.2481 -0.0007 7 6 1.8260 5.6205 -0.0009 8 1 2.6355 6.3270 0.1081 9 6 0.5128 6.0783 -0.1421 10 7 -0.4822 5.2248 -0.1452 11 14 0.1757 7.9064 -0.3262 12 1 0.0743 8.2482 -1.7678 13 1 -1.1001 8.2456 0.3539 14 1 1.2850 8.6787 0.2887 15 16 0.8739 2.9794 0.0006 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 4.2684 1.7364 -0.0033 20 1 4.2589 4.2663 -0.0003 21 1 -1.3935 5.5426 -0.2428 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238411674.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:00 Heat of formation + Delta-G solvation = -14.991644 kcal Electronic energy + Delta-G solvation = -8599.707958 eV Core-core repulsion = 6884.684794 eV Total energy + Delta-G solvation = -1715.023164 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 200.002 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.66157 -35.71431 -31.00046 -29.84119 -26.95077 -23.98786 -20.26153 -19.96383 -17.69791 -16.57038 -16.19471 -15.50834 -14.60944 -14.37188 -14.10026 -13.92691 -13.63042 -13.08898 -12.81590 -12.47523 -12.27916 -11.91483 -11.46294 -11.27447 -10.81089 -10.08523 -8.90476 -8.79999 -8.28163 -6.39406 0.62629 1.09109 1.31520 1.36857 1.47080 1.54377 1.96000 2.11314 2.17140 2.20831 3.04247 4.29580 4.35301 4.72355 4.87016 4.95611 5.10921 5.54651 5.74564 6.01509 6.11199 6.50311 6.57566 7.99351 Molecular weight = 200.00amu Principal moments of inertia in cm(-1) A = 0.068240 B = 0.011219 C = 0.009694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.215274 B = 2495.241210 C = 2887.702959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.123 6.123 3 C -0.418 4.418 4 C -0.054 4.054 5 C -0.365 4.365 6 C 0.002 3.998 7 C -0.410 4.410 8 H 0.101 0.899 9 C 0.013 3.987 10 N -0.807 5.807 11 Si 1.014 2.986 12 H -0.259 1.259 13 H -0.260 1.260 14 H -0.253 1.253 15 S 0.149 5.851 16 H 0.072 0.928 17 H 0.129 0.871 18 H 0.073 0.927 19 H 0.109 0.891 20 H 0.107 0.893 21 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 -0.556 -0.274 3.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.110 5.890 3 C -0.644 4.644 4 C -0.088 4.088 5 C -0.391 4.391 6 C -0.120 4.120 7 C -0.446 4.446 8 H 0.119 0.881 9 C -0.205 4.205 10 N -0.434 5.434 11 Si 0.832 3.168 12 H -0.184 1.184 13 H -0.184 1.184 14 H -0.177 1.177 15 S 0.405 5.595 16 H 0.092 0.908 17 H 0.148 0.852 18 H 0.092 0.908 19 H 0.127 0.873 20 H 0.125 0.875 21 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.390 -1.688 -0.278 4.711 hybrid contribution 0.871 1.687 -0.075 1.900 sum -3.519 0.000 -0.353 3.536 Atomic orbital electron populations 1.23449 0.93954 1.07421 1.05144 1.84086 1.07957 1.01136 1.95853 1.26448 1.02466 1.00423 1.35037 1.19569 0.95118 0.93937 1.00209 1.19830 0.95913 0.93772 1.29604 1.22326 0.95058 0.97631 0.96980 1.19538 0.95217 0.91121 1.38706 0.88125 1.27225 0.94430 1.07166 0.91656 1.68885 1.02369 1.39001 1.33193 0.84668 0.79279 0.73095 0.79771 1.18351 1.18362 1.17651 1.84130 1.06340 0.92542 1.76446 0.90848 0.85226 0.90809 0.87327 0.87475 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.46 113.37 1.07 -3.25 14 2 S -0.12 -5.00 22.88 -56.49 -1.29 -6.29 14 3 C -0.42 -20.82 6.72 67.51 0.45 -20.36 14 4 C -0.05 -2.79 10.16 21.54 0.22 -2.57 14 5 C -0.37 -19.52 10.17 21.87 0.22 -19.29 14 6 C 0.00 0.13 6.17 22.67 0.14 0.27 14 7 C -0.41 -21.12 9.26 23.02 0.21 -20.91 14 8 H 0.10 4.90 7.85 -2.91 -0.02 4.87 14 9 C 0.01 0.60 5.49 85.18 0.47 1.07 14 10 N -0.81 -38.44 10.67 21.82 0.23 -38.20 14 11 Si 1.01 34.43 29.57 68.60 2.03 36.46 14 12 H -0.26 -8.53 7.11 99.48 0.71 -7.82 14 13 H -0.26 -8.24 7.11 99.48 0.71 -7.54 14 14 H -0.25 -8.37 7.11 99.48 0.71 -7.66 14 15 S 0.15 7.61 18.69 -56.49 -1.06 6.56 14 16 H 0.07 2.52 8.00 -2.40 -0.02 2.50 14 17 H 0.13 3.24 8.14 -2.39 -0.02 3.23 14 18 H 0.07 2.53 7.99 -2.40 -0.02 2.51 14 19 H 0.11 5.10 8.06 -2.91 -0.02 5.08 14 20 H 0.11 5.42 8.06 -2.91 -0.02 5.39 14 21 H 0.31 12.98 8.30 -92.71 -0.77 12.21 14 Total: -1.00 -57.68 216.94 3.92 -53.75 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.22 Total: 12.77 kcal Atomic # 6 Polarization: -67.83 SS G_CDS: 2.79 Total: -65.04 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.23 Total: -38.20 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.35 Total: 0.26 kcal Total: -57.68 3.92 -53.75 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238411674.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.763 kcal (2) G-P(sol) polarization free energy of solvation -57.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds