Wall clock time and date at job start Mon Mar 30 2020 02:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47207 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47197 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46829 * 120.00678 * 3 2 1 7 7 C 1.37871 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00254 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00052 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47503 * 300.00135 * 9 7 2 11 11 N 1.46899 * 109.47134 * 60.00617 * 9 7 2 12 12 C 1.50706 * 109.47103 * 180.02562 * 9 7 2 13 13 N 1.36466 * 125.90764 * 264.69260 * 12 9 7 14 14 H 0.97006 * 125.63665 * 0.02562 * 13 12 9 15 15 C 1.36322 * 108.72381 * 179.89064 * 13 12 9 16 16 C 1.34855 * 108.24498 * 0.37605 * 15 13 12 17 17 C 1.34908 * 125.90000 * 85.00276 * 12 9 7 18 18 Cl 1.73602 * 126.29889 * 359.97438 * 17 12 9 19 19 H 0.97000 * 119.99969 * 359.97438 * 1 2 3 20 20 H 1.00903 * 111.00310 * 59.99773 * 11 9 7 21 21 H 1.00898 * 111.00542 * 183.95555 * 11 9 7 22 22 H 1.08003 * 125.87869 * 180.14404 * 15 13 12 23 23 H 1.07998 * 126.29099 * 179.79647 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 0.4062 -2.5768 -1.1997 12 6 2.2304 -3.6446 -0.0005 13 7 2.6728 -4.3193 -1.1011 14 1 2.4088 -4.1410 -2.0174 15 6 3.5494 -5.2834 -0.7003 16 6 3.6552 -5.2258 0.6428 17 6 2.8169 -4.1840 1.0881 18 17 2.5819 -3.6866 2.7347 19 1 -0.4850 0.8400 0.0004 20 1 0.9639 -2.5252 -2.0390 21 1 -0.1578 -3.4134 -1.1912 22 1 4.0668 -5.9767 -1.3468 23 1 4.2699 -5.8609 1.2634 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238584352.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:52 Heat of formation + Delta-G solvation = 15.202490 kcal Electronic energy + Delta-G solvation = -10753.338516 eV Core-core repulsion = 8627.120841 eV Total energy + Delta-G solvation = -2126.217675 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.97054 -37.03243 -36.28764 -33.48693 -31.55106 -29.64353 -27.64849 -23.92714 -21.42448 -21.03855 -18.65599 -18.35500 -16.53716 -16.11595 -15.27812 -15.10822 -14.57304 -14.30153 -13.81526 -13.64924 -13.17948 -12.71188 -12.66811 -12.56957 -11.98116 -11.45707 -11.30415 -10.54753 -9.55509 -9.09769 -8.76219 -7.96675 -6.18420 1.36252 1.44348 1.46209 1.53135 1.61017 1.97376 2.48439 2.70292 3.26553 4.31009 4.34645 4.45389 4.61768 4.95457 5.28035 5.38152 5.75392 5.90304 6.00153 6.20481 6.61659 6.78580 7.04735 7.17585 7.53338 9.05053 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.037415 B = 0.012899 C = 0.011425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.188180 B = 2170.191371 C = 2450.253306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.040 3.960 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.041 0.959 9 C 0.292 3.708 10 H 0.024 0.976 11 N -0.820 5.820 12 C 0.022 3.978 13 N -0.545 5.545 14 H 0.424 0.576 15 C -0.001 4.001 16 C -0.211 4.211 17 C -0.148 4.148 18 Cl -0.076 7.076 19 H 0.256 0.744 20 H 0.324 0.676 21 H 0.315 0.685 22 H 0.212 0.788 23 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.734 -9.191 -2.553 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.059 0.941 9 C 0.181 3.819 10 H 0.042 0.958 11 N -0.348 5.348 12 C -0.096 4.096 13 N -0.142 5.142 14 H 0.263 0.737 15 C -0.131 4.131 16 C -0.236 4.236 17 C -0.181 4.181 18 Cl -0.048 7.048 19 H 0.065 0.935 20 H 0.136 0.864 21 H 0.126 0.874 22 H 0.228 0.772 23 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.149 -8.337 -2.301 10.066 hybrid contribution 0.705 0.267 -0.143 0.767 sum 5.854 -8.070 -2.444 10.265 Atomic orbital electron populations 1.70196 1.06853 1.26482 1.47817 1.25580 0.95370 1.01487 0.94000 0.85869 0.78566 0.80027 0.78550 1.19710 1.20939 1.20340 1.20927 0.91733 0.90767 1.53935 0.94103 1.17433 0.86466 0.87581 0.90422 0.95815 1.58830 1.28450 1.43562 1.03930 1.21910 1.02904 0.98532 0.86218 1.41772 1.36220 1.27803 1.08417 0.73675 1.22331 0.98485 0.96893 0.95350 1.20989 1.05520 1.01971 0.95153 1.20143 1.08817 1.04234 0.84941 1.98249 1.96641 1.91552 1.18365 0.93484 0.86395 0.87353 0.77150 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.05 12.77 21.45 0.27 -50.78 14 2 C 0.04 2.20 5.39 84.65 0.46 2.65 14 3 Si 0.94 44.06 29.54 68.60 2.03 46.09 14 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 14 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 14 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 14 7 C -0.53 -29.30 8.71 25.60 0.22 -29.07 14 8 H 0.04 2.29 7.74 -2.91 -0.02 2.27 14 9 C 0.29 14.36 2.86 43.43 0.12 14.48 14 10 H 0.02 1.36 8.04 -2.39 -0.02 1.34 14 11 N -0.82 -36.40 8.41 -174.95 -1.47 -37.88 14 12 C 0.02 0.92 6.03 41.07 0.25 1.17 14 13 N -0.54 -17.13 5.91 -182.65 -1.08 -18.21 14 14 H 0.42 11.05 8.14 -92.70 -0.75 10.29 14 15 C 0.00 -0.01 11.93 83.22 0.99 0.98 14 16 C -0.21 -6.81 10.86 22.16 0.24 -6.57 14 17 C -0.15 -6.01 6.69 22.17 0.15 -5.86 14 18 Cl -0.08 -3.14 28.98 -2.72 -0.08 -3.22 14 19 H 0.26 14.30 8.31 -92.71 -0.77 13.53 14 20 H 0.32 13.00 8.16 -89.69 -0.73 12.27 14 21 H 0.31 12.37 9.06 -89.70 -0.81 11.56 14 22 H 0.21 3.42 8.06 -2.91 -0.02 3.40 14 23 H 0.15 4.19 8.06 -2.91 -0.02 4.17 14 Total: -1.00 -64.52 224.98 1.06 -63.45 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -1.04 Total: 22.76 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 2.43 Total: -22.22 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -2.28 Total: -106.86 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: -3.14 SS G_CDS: -0.08 Total: -3.22 kcal Total: -64.52 1.06 -63.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238584352.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.655 kcal (2) G-P(sol) polarization free energy of solvation -64.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds