Wall clock time and date at job start Mon Mar 30 2020 02:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 11 11 N 1.46904 * 109.46860 * 60.28074 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.34862 * 125.87839 * 115.00409 * 12 9 7 14 14 C 1.40939 * 107.43415 * 179.97438 * 13 12 9 15 15 Cl 1.73601 * 126.29178 * 179.97438 * 14 13 12 16 16 C 1.34904 * 107.40858 * 359.97438 * 14 13 12 17 17 N 1.36329 * 125.87913 * 294.69314 * 12 9 7 18 18 H 0.96998 * 125.63421 * 0.02595 * 17 12 9 19 19 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 20 20 H 1.00906 * 110.99862 * 60.00007 * 11 9 7 21 21 H 1.00899 * 111.00096 * 183.94896 * 11 9 7 22 22 H 1.07999 * 126.27706 * 359.97438 * 13 12 9 23 23 H 1.07998 * 125.90183 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8713 -0.6783 -0.8962 11 7 4.0062 -0.5038 1.1930 12 6 4.0139 -2.6148 -0.0107 13 6 4.7087 -3.2040 -1.0051 14 6 4.9789 -4.5280 -0.6045 15 17 5.8467 -5.7215 -1.5190 16 6 4.4392 -4.6972 0.6202 17 7 3.8495 -3.5239 0.9918 18 1 3.3878 -3.3638 1.8297 19 1 -0.4850 0.8400 -0.0004 20 1 3.6862 -0.9631 2.0325 21 1 5.0127 -0.4338 1.1805 22 1 5.0038 -2.7454 -1.9373 23 1 4.4717 -5.6033 1.2069 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238587788.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:18 Heat of formation + Delta-G solvation = 38.991701 kcal Electronic energy + Delta-G solvation = -10599.245053 eV Core-core repulsion = 8474.058956 eV Total energy + Delta-G solvation = -2125.186097 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.68187 -36.03200 -34.67424 -31.82366 -30.30685 -28.27422 -26.09733 -22.06678 -20.09133 -19.72545 -17.07870 -16.85571 -14.83719 -14.26783 -13.88002 -13.74328 -13.45247 -12.90094 -12.33064 -12.26557 -11.78089 -11.46555 -10.83024 -10.60582 -10.19998 -10.10925 -9.35053 -8.63174 -8.24933 -7.63535 -7.28979 -6.09206 -4.21455 2.62334 2.68982 3.29743 3.46511 3.57101 3.86592 3.95321 4.63128 5.21805 5.42183 5.74885 5.82847 5.83660 6.38792 6.49074 6.72553 7.20992 7.43169 7.52472 7.95280 8.01472 8.22572 8.55721 8.88921 9.53847 11.00117 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.066269 B = 0.008936 C = 0.008796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.416945 B = 3132.704817 C = 3182.657093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.086 3.914 3 Si 0.868 3.132 4 H -0.295 1.295 5 H -0.303 1.303 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.244 3.756 10 H 0.061 0.939 11 N -0.833 5.833 12 C 0.060 3.940 13 C -0.211 4.211 14 C -0.109 4.109 15 Cl -0.076 7.076 16 C -0.021 4.021 17 N -0.541 5.541 18 H 0.418 0.582 19 H 0.264 0.736 20 H 0.325 0.675 21 H 0.312 0.688 22 H 0.137 0.863 23 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.110 -6.356 2.065 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.119 4.119 3 Si 0.695 3.305 4 H -0.222 1.222 5 H -0.231 1.231 6 H -0.114 1.114 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.134 3.866 10 H 0.079 0.921 11 N -0.361 5.361 12 C -0.057 4.057 13 C -0.235 4.235 14 C -0.144 4.144 15 Cl -0.048 7.048 16 C -0.153 4.153 17 N -0.136 5.136 18 H 0.256 0.744 19 H 0.074 0.926 20 H 0.138 0.862 21 H 0.123 0.877 22 H 0.154 0.846 23 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.545 -5.696 1.874 11.272 hybrid contribution 0.436 -0.320 0.324 0.631 sum 9.982 -6.016 2.197 11.860 Atomic orbital electron populations 1.69956 1.07009 1.27555 1.48724 1.24997 0.94551 1.00201 0.92117 0.87168 0.84467 0.80854 0.78032 1.22216 1.23064 1.11426 1.20718 0.87243 0.94625 1.54184 0.91283 1.18314 0.96315 0.81026 0.90977 0.92138 1.60092 1.13153 1.57435 1.05387 1.22013 0.99623 0.95699 0.88317 1.20516 1.08687 0.93162 1.01158 1.20038 1.07497 0.91869 0.94953 1.98264 1.75796 1.56606 1.74132 1.21322 1.05280 0.91268 0.97412 1.41802 1.44377 1.09774 1.17665 0.74434 0.92634 0.86240 0.87682 0.84560 0.81991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.96 55.43 0.77 -26.22 14 2 C 0.09 2.41 5.47 -17.82 -0.10 2.32 14 3 Si 0.87 20.85 26.94 -169.99 -4.58 16.28 14 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 14 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 14 6 H -0.19 -4.23 5.17 56.52 0.29 -3.93 14 7 C -0.53 -14.11 9.29 -34.44 -0.32 -14.43 14 8 H 0.07 2.05 7.98 -52.49 -0.42 1.63 14 9 C 0.24 5.26 2.59 -70.01 -0.18 5.08 14 10 H 0.06 1.35 7.53 -51.93 -0.39 0.96 14 11 N -0.83 -15.81 5.83 -6.65 -0.04 -15.84 14 12 C 0.06 1.17 5.89 -81.79 -0.48 0.69 14 13 C -0.21 -3.98 10.74 -39.76 -0.43 -4.41 14 14 C -0.11 -1.88 6.70 -39.74 -0.27 -2.15 14 15 Cl -0.08 -1.15 29.31 -51.86 -1.52 -2.67 14 16 C -0.02 -0.32 11.92 -16.67 -0.20 -0.52 14 17 N -0.54 -9.01 6.08 -9.08 -0.06 -9.06 14 18 H 0.42 6.17 8.96 -40.82 -0.37 5.81 14 19 H 0.26 7.55 8.31 -40.82 -0.34 7.21 14 20 H 0.33 5.81 8.98 -39.29 -0.35 5.45 14 21 H 0.31 5.17 9.06 -39.29 -0.36 4.81 14 22 H 0.14 2.46 8.06 -52.49 -0.42 2.04 14 23 H 0.16 2.00 8.06 -52.49 -0.42 1.58 14 LS Contribution 221.05 15.07 3.33 3.33 Total: -1.00 -30.02 221.05 -6.04 -36.05 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -1.97 Total: 11.56 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -1.97 Total: -13.42 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.68 Total: -51.13 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.58 Total: 16.28 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.52 Total: -2.67 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -30.02 -6.04 -36.05 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238587788.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.043 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds