Wall clock time and date at job start Mon Mar 30 2020 02:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99565 * 2 1 4 4 H 1.48497 * 109.47469 * 270.00166 * 3 2 1 5 5 H 1.48501 * 109.47465 * 30.00413 * 3 2 1 6 6 H 1.48504 * 109.47103 * 150.00190 * 3 2 1 7 7 C 1.37871 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99557 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00492 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47253 * 59.99813 * 9 7 2 11 11 N 1.46898 * 109.47054 * 300.00067 * 9 7 2 12 12 C 1.50699 * 109.47239 * 179.97438 * 9 7 2 13 13 C 1.34867 * 126.27791 * 100.04525 * 12 9 7 14 14 N 1.36326 * 108.23935 * 179.97438 * 13 12 9 15 15 H 0.97001 * 125.63697 * 180.02562 * 14 13 12 16 16 C 1.36477 * 108.72413 * 359.75220 * 14 13 12 17 17 C 1.34908 * 108.19354 * 0.40287 * 16 14 13 18 18 Cl 1.73599 * 126.30086 * 179.87637 * 17 16 14 19 19 H 0.96994 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.00907 * 110.99747 * 299.99552 * 11 9 7 21 21 H 1.00898 * 111.00159 * 63.94920 * 11 9 7 22 22 H 1.07994 * 125.88006 * 359.97438 * 13 12 9 23 23 H 1.07999 * 125.90638 * 180.26778 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4061 -2.5778 1.1973 12 6 2.2305 -3.6445 -0.0027 13 6 2.6050 -4.3752 1.0672 14 7 3.5029 -5.3126 0.6506 15 1 3.9342 -5.9725 1.2157 16 6 3.6900 -5.1729 -0.6941 17 6 2.9227 -4.1491 -1.1220 18 17 2.8038 -3.5655 -2.7526 19 1 -0.4850 0.8400 0.0004 20 1 0.9639 -2.5270 2.0367 21 1 -0.3012 -1.8583 1.1891 22 1 2.2539 -4.2409 2.0796 23 1 4.3415 -5.7761 -1.3089 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238613625.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:17 Heat of formation + Delta-G solvation = 33.688636 kcal Electronic energy + Delta-G solvation = -10726.956900 eV Core-core repulsion = 8601.540845 eV Total energy + Delta-G solvation = -2125.416055 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.39383 -35.50148 -34.59183 -31.39008 -29.55618 -27.71061 -25.78017 -22.34528 -20.06406 -18.54435 -17.54473 -16.31668 -14.56921 -13.84875 -13.68711 -13.50595 -13.01835 -12.71377 -12.39698 -11.43178 -11.09985 -11.01808 -10.78207 -10.63523 -9.95704 -9.92565 -9.51513 -8.52878 -7.72563 -7.42470 -7.04204 -5.93168 -4.07188 2.77648 3.08435 3.31713 3.38154 3.41271 3.70292 4.08259 4.47298 5.28287 5.55090 5.89452 6.18597 6.46431 6.74753 7.06788 7.36686 7.64059 7.88794 7.90477 8.14996 8.29315 8.85669 9.09331 9.24640 9.62686 11.04542 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.037287 B = 0.012925 C = 0.011273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.760277 B = 2165.786124 C = 2483.312074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.053 0.947 9 C 0.270 3.730 10 H 0.047 0.953 11 N -0.851 5.851 12 C -0.094 4.094 13 C -0.019 4.019 14 N -0.564 5.564 15 H 0.411 0.589 16 C -0.025 4.025 17 C -0.101 4.101 18 Cl -0.065 7.065 19 H 0.263 0.737 20 H 0.307 0.693 21 H 0.355 0.645 22 H 0.165 0.835 23 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 -8.253 0.784 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.159 3.841 10 H 0.065 0.935 11 N -0.380 5.380 12 C -0.101 4.101 13 C -0.147 4.147 14 N -0.160 5.160 15 H 0.246 0.754 16 C -0.156 4.156 17 C -0.136 4.136 18 Cl -0.036 7.036 19 H 0.073 0.927 20 H 0.116 0.884 21 H 0.171 0.829 22 H 0.182 0.818 23 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.522 -8.895 0.457 10.479 hybrid contribution 1.134 1.742 0.200 2.088 sum 6.656 -7.153 0.657 9.793 Atomic orbital electron populations 1.69742 1.05749 1.26825 1.51512 1.24991 0.94871 0.99054 0.94878 0.86587 0.79794 0.83393 0.78156 1.20650 1.21370 1.20060 1.21812 0.93540 0.91083 1.50213 0.92869 1.17376 0.88264 0.87222 0.91223 0.93490 1.59494 1.18467 1.56004 1.04026 1.20023 1.00796 0.99254 0.90024 1.21499 0.98403 0.94905 0.99916 1.41687 1.37243 1.29581 1.07537 0.75363 1.21276 1.06649 1.03052 0.84661 1.20042 1.06102 1.00896 0.86609 1.98270 1.97728 1.88545 1.19098 0.92735 0.88422 0.82928 0.81822 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 11.54 55.43 0.64 -24.78 14 2 C 0.06 1.75 5.38 -17.82 -0.10 1.66 14 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 14 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 14 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 14 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 14 7 C -0.53 -14.58 8.71 -34.44 -0.30 -14.88 14 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 14 9 C 0.27 6.95 3.10 -70.02 -0.22 6.73 14 10 H 0.05 1.37 8.14 -51.93 -0.42 0.95 14 11 N -0.85 -20.52 8.88 -6.65 -0.06 -20.58 14 12 C -0.09 -2.11 5.23 -104.79 -0.55 -2.65 14 13 C -0.02 -0.35 11.15 -16.75 -0.19 -0.53 14 14 N -0.56 -8.39 6.08 -12.80 -0.08 -8.46 14 15 H 0.41 4.28 8.96 -40.82 -0.37 3.91 14 16 C -0.02 -0.40 11.92 -16.67 -0.20 -0.60 14 17 C -0.10 -2.08 6.69 -39.74 -0.27 -2.34 14 18 Cl -0.06 -1.31 29.20 -51.86 -1.51 -2.82 14 19 H 0.26 7.13 8.31 -40.82 -0.34 6.79 14 20 H 0.31 6.91 8.02 -39.29 -0.31 6.60 14 21 H 0.35 9.20 7.08 -39.29 -0.28 8.93 14 22 H 0.16 2.75 7.36 -52.49 -0.39 2.37 14 23 H 0.16 2.05 8.06 -52.49 -0.42 1.63 14 LS Contribution 222.39 15.07 3.35 3.35 Total: -1.00 -29.96 222.39 -6.22 -36.18 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -1.73 Total: 13.10 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.81 Total: -12.62 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.50 Total: -53.83 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.51 Total: -2.82 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.96 -6.22 -36.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238613625.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.872 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds