Wall clock time and date at job start Mon Mar 30 2020 02:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99565 * 2 1 4 4 H 1.48497 * 109.47469 * 270.00166 * 3 2 1 5 5 H 1.48501 * 109.47465 * 30.00413 * 3 2 1 6 6 H 1.48504 * 109.47103 * 150.00190 * 3 2 1 7 7 C 1.37871 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99557 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00492 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47253 * 59.99813 * 9 7 2 11 11 N 1.46898 * 109.47054 * 300.00067 * 9 7 2 12 12 C 1.50699 * 109.47239 * 179.97438 * 9 7 2 13 13 C 1.34867 * 126.27791 * 100.04525 * 12 9 7 14 14 N 1.36326 * 108.23935 * 179.97438 * 13 12 9 15 15 H 0.97001 * 125.63697 * 180.02562 * 14 13 12 16 16 C 1.36477 * 108.72413 * 359.75220 * 14 13 12 17 17 C 1.34908 * 108.19354 * 0.40287 * 16 14 13 18 18 Cl 1.73599 * 126.30086 * 179.87637 * 17 16 14 19 19 H 0.96994 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.00907 * 110.99747 * 299.99552 * 11 9 7 21 21 H 1.00898 * 111.00159 * 63.94920 * 11 9 7 22 22 H 1.07994 * 125.88006 * 359.97438 * 13 12 9 23 23 H 1.07999 * 125.90638 * 180.26778 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4061 -2.5778 1.1973 12 6 2.2305 -3.6445 -0.0027 13 6 2.6050 -4.3752 1.0672 14 7 3.5029 -5.3126 0.6506 15 1 3.9342 -5.9725 1.2157 16 6 3.6900 -5.1729 -0.6941 17 6 2.9227 -4.1491 -1.1220 18 17 2.8038 -3.5655 -2.7526 19 1 -0.4850 0.8400 0.0004 20 1 0.9639 -2.5270 2.0367 21 1 -0.3012 -1.8583 1.1891 22 1 2.2539 -4.2409 2.0796 23 1 4.3415 -5.7761 -1.3089 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238613625.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:17 Heat of formation + Delta-G solvation = 12.027109 kcal Electronic energy + Delta-G solvation = -10727.896214 eV Core-core repulsion = 8601.540845 eV Total energy + Delta-G solvation = -2126.355369 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.81211 -37.01656 -36.54214 -33.38488 -31.10146 -29.21322 -27.82611 -24.21715 -21.47608 -20.07426 -19.05038 -18.42900 -16.54421 -15.66984 -15.18032 -15.02558 -14.64725 -14.42974 -14.03043 -13.21957 -13.03731 -12.70507 -12.65084 -12.50634 -11.92272 -11.70675 -11.27641 -10.64094 -9.30216 -9.04468 -8.85006 -8.00468 -6.24802 1.38353 1.40146 1.42087 1.49799 1.65055 2.08782 2.45935 2.79972 3.14640 4.31385 4.57148 4.63297 4.77002 5.13883 5.32859 5.68113 5.74515 5.98921 6.16233 6.28540 6.77541 6.93733 7.05844 7.22931 7.50247 8.92448 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.037287 B = 0.012925 C = 0.011273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.760277 B = 2165.786124 C = 2483.312074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.952 3.048 4 H -0.282 1.282 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.040 0.960 9 C 0.278 3.722 10 H -0.001 1.001 11 N -0.841 5.841 12 C -0.144 4.144 13 C -0.007 4.007 14 N -0.537 5.537 15 H 0.437 0.563 16 C 0.008 3.992 17 C -0.145 4.145 18 Cl -0.077 7.077 19 H 0.264 0.736 20 H 0.318 0.682 21 H 0.343 0.657 22 H 0.180 0.820 23 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.427 -9.237 1.606 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.208 1.208 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.058 0.942 9 C 0.167 3.833 10 H 0.017 0.983 11 N -0.368 5.368 12 C -0.151 4.151 13 C -0.138 4.138 14 N -0.135 5.135 15 H 0.278 0.722 16 C -0.126 4.126 17 C -0.179 4.179 18 Cl -0.049 7.049 19 H 0.074 0.926 20 H 0.127 0.873 21 H 0.157 0.843 22 H 0.197 0.803 23 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.118 -9.918 1.308 12.278 hybrid contribution 0.659 1.970 -0.044 2.078 sum 7.777 -7.948 1.263 11.191 Atomic orbital electron populations 1.69845 1.06801 1.27546 1.51913 1.25686 0.95669 1.02010 0.94647 0.85659 0.78768 0.79833 0.77933 1.20808 1.20542 1.19647 1.21980 0.92911 0.92494 1.50240 0.94203 1.17044 0.88163 0.88390 0.89720 0.98270 1.59442 1.18093 1.55145 1.04155 1.19863 1.02419 1.00234 0.92608 1.21563 0.98105 0.94499 0.99588 1.41640 1.35654 1.28797 1.07431 0.72202 1.21798 1.04605 1.01042 0.85128 1.20322 1.08347 1.03152 0.86081 1.98251 1.97891 1.88950 1.19773 0.92625 0.87281 0.84303 0.80266 0.78024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.85 11.54 21.45 0.25 -52.61 14 2 C 0.02 1.05 5.38 84.65 0.46 1.51 14 3 Si 0.95 44.58 29.54 68.60 2.03 46.60 14 4 H -0.28 -13.20 7.11 99.48 0.71 -12.50 14 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 14 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 14 7 C -0.54 -30.13 8.71 25.60 0.22 -29.91 14 8 H 0.04 2.30 7.74 -2.91 -0.02 2.27 14 9 C 0.28 14.61 3.10 43.42 0.13 14.75 14 10 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 14 11 N -0.84 -40.95 8.88 -174.96 -1.55 -42.50 14 12 C -0.14 -6.39 5.23 -19.98 -0.10 -6.49 14 13 C -0.01 -0.24 11.15 83.22 0.93 0.68 14 14 N -0.54 -13.84 6.08 -194.42 -1.18 -15.02 14 15 H 0.44 6.90 8.96 -92.71 -0.83 6.07 14 16 C 0.01 0.23 11.92 83.20 0.99 1.22 14 17 C -0.14 -5.77 6.69 22.17 0.15 -5.62 14 18 Cl -0.08 -3.11 29.20 -2.72 -0.08 -3.19 14 19 H 0.26 14.46 8.31 -92.71 -0.77 13.69 14 20 H 0.32 14.18 8.02 -89.69 -0.72 13.47 14 21 H 0.34 18.13 7.08 -89.70 -0.63 17.50 14 22 H 0.18 5.55 7.36 -2.91 -0.02 5.53 14 23 H 0.20 4.15 8.06 -2.91 -0.02 4.12 14 Total: -1.00 -65.51 222.39 1.31 -64.20 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.92 Total: 26.38 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 2.78 Total: -23.86 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -2.49 Total: -110.13 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 17 Polarization: -3.11 SS G_CDS: -0.08 Total: -3.19 kcal Total: -65.51 1.31 -64.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238613625.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.227 kcal (2) G-P(sol) polarization free energy of solvation -65.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds