Wall clock time and date at job start Mon Mar 30 2020 02:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00055 * 2 1 4 4 H 1.48491 * 109.47021 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.46977 * 119.99922 * 3 2 1 6 6 H 1.48500 * 109.46905 * 239.99765 * 3 2 1 7 7 C 1.37884 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99795 * 185.84461 * 7 2 1 9 9 C 1.50698 * 120.00149 * 5.84191 * 7 2 1 10 10 H 1.09008 * 109.46910 * 35.28156 * 9 7 2 11 11 N 1.46897 * 109.47006 * 275.28602 * 9 7 2 12 12 C 1.50699 * 109.47136 * 155.27924 * 9 7 2 13 13 C 1.34815 * 125.88691 * 245.00174 * 12 9 7 14 14 C 1.40932 * 107.43254 * 180.02562 * 13 12 9 15 15 C 1.34966 * 107.41810 * 359.97438 * 14 13 12 16 16 Cl 1.73596 * 125.89723 * 179.97438 * 15 14 13 17 17 N 1.36349 * 108.20692 * 359.73951 * 15 14 13 18 18 H 0.97000 * 125.64828 * 180.29939 * 17 15 14 19 19 H 0.96999 * 120.00095 * 175.09032 * 1 2 3 20 20 H 1.00905 * 110.99840 * 295.37341 * 11 9 7 21 21 H 1.00899 * 111.00679 * 59.32809 * 11 9 7 22 22 H 1.07998 * 126.28623 * 0.02562 * 13 12 9 23 23 H 1.07996 * 126.29131 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0803 -1.1965 0.0958 9 6 1.2569 -2.4959 -0.1317 10 1 0.4043 -2.3592 -0.7970 11 7 0.7823 -2.9244 1.1907 12 6 2.1749 -3.5468 -0.7009 13 6 2.0357 -4.1541 -1.8965 14 6 3.1032 -5.0638 -2.0348 15 6 3.8552 -4.9771 -0.9174 16 17 5.2925 -5.8919 -0.5843 17 7 3.2940 -4.0432 -0.0976 18 1 3.6327 -3.7774 0.7717 19 1 -0.4850 -0.8369 -0.0719 20 1 1.5569 -3.1305 1.8036 21 1 0.1731 -2.2311 1.5985 22 1 1.2503 -3.9762 -2.6161 23 1 3.2859 -5.7112 -2.8796 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238619301.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:22 Heat of formation + Delta-G solvation = 22.788178 kcal Electronic energy + Delta-G solvation = -10606.443684 eV Core-core repulsion = 8480.554949 eV Total energy + Delta-G solvation = -2125.888735 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.53661 -36.33846 -34.93043 -31.42120 -30.45887 -28.10280 -25.30969 -22.33207 -20.07269 -19.71952 -17.73566 -16.66735 -14.76598 -14.14978 -13.89414 -13.61512 -13.11703 -12.87889 -12.36346 -12.29419 -11.47873 -11.28884 -10.96447 -10.84620 -10.35597 -10.12605 -9.56524 -8.75151 -8.39926 -7.68456 -7.20154 -6.55958 -4.39019 2.17512 2.70106 3.29917 3.34333 3.51866 3.54538 4.04231 4.35414 5.13274 5.70900 5.89365 6.02215 6.18646 6.62357 6.66761 6.91377 7.37893 7.58243 7.83220 8.00141 8.06978 8.28939 8.49910 8.58469 9.34243 10.75926 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.048904 B = 0.009495 C = 0.008831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.408635 B = 2948.172465 C = 3169.728829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.031 3.969 3 Si 1.069 2.931 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.633 4.633 8 H 0.048 0.952 9 C 0.247 3.753 10 H 0.067 0.933 11 N -0.852 5.852 12 C 0.119 3.881 13 C -0.222 4.222 14 C -0.163 4.163 15 C 0.028 3.972 16 Cl -0.049 7.049 17 N -0.544 5.544 18 H 0.412 0.588 19 H 0.273 0.727 20 H 0.314 0.686 21 H 0.339 0.661 22 H 0.135 0.865 23 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 -6.830 -0.431 9.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.896 3.104 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.673 4.673 8 H 0.066 0.934 9 C 0.138 3.862 10 H 0.085 0.915 11 N -0.379 5.379 12 C 0.003 3.997 13 C -0.246 4.246 14 C -0.190 4.190 15 C -0.108 4.108 16 Cl -0.021 7.021 17 N -0.142 5.142 18 H 0.248 0.752 19 H 0.085 0.915 20 H 0.123 0.877 21 H 0.151 0.849 22 H 0.153 0.847 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.906 -5.863 -0.621 8.345 hybrid contribution 1.219 -0.771 0.642 1.579 sum 7.125 -6.634 0.021 9.735 Atomic orbital electron populations 1.70849 1.06734 1.31416 1.44434 1.25897 0.96390 1.02744 0.92558 0.83539 0.74984 0.75181 0.76685 1.20537 1.21491 1.21210 1.22533 0.95266 0.92427 1.57094 0.93363 1.17932 0.91933 0.87824 0.88535 0.91474 1.59600 1.22518 1.49872 1.05955 1.21014 0.88058 0.96883 0.93725 1.20523 1.02505 1.02829 0.98741 1.20505 0.97187 1.04196 0.97143 1.20536 0.94264 1.00358 0.95649 1.98317 1.36298 1.71691 1.95791 1.41856 1.22290 1.31942 1.18065 0.75181 0.91549 0.87680 0.84913 0.84674 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 13.63 55.43 0.76 -24.38 14 2 C 0.03 0.83 5.45 -17.82 -0.10 0.73 14 3 Si 1.07 23.96 29.91 -169.99 -5.08 18.87 14 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 14 5 H -0.29 -6.22 7.11 56.52 0.40 -5.81 14 6 H -0.29 -6.27 7.11 56.52 0.40 -5.87 14 7 C -0.63 -16.47 8.58 -34.44 -0.30 -16.77 14 8 H 0.05 1.28 7.81 -52.49 -0.41 0.87 14 9 C 0.25 5.87 2.82 -70.02 -0.20 5.67 14 10 H 0.07 1.74 6.93 -51.92 -0.36 1.38 14 11 N -0.85 -18.52 9.24 -6.65 -0.06 -18.58 14 12 C 0.12 2.56 5.91 -81.73 -0.48 2.08 14 13 C -0.22 -4.52 10.74 -39.78 -0.43 -4.95 14 14 C -0.16 -2.97 10.84 -39.72 -0.43 -3.40 14 15 C 0.03 0.51 7.78 -16.71 -0.13 0.38 14 16 Cl -0.05 -0.73 29.31 -51.86 -1.52 -2.25 14 17 N -0.54 -10.38 6.05 -6.31 -0.04 -10.42 14 18 H 0.41 7.20 8.96 -40.82 -0.37 6.83 14 19 H 0.27 7.56 6.38 -40.82 -0.26 7.30 14 20 H 0.31 6.35 8.94 -39.29 -0.35 6.00 14 21 H 0.34 7.64 8.60 -39.29 -0.34 7.30 14 22 H 0.14 2.58 8.06 -52.49 -0.42 2.16 14 23 H 0.14 2.10 8.06 -52.49 -0.42 1.67 14 LS Contribution 225.29 15.07 3.40 3.40 Total: -1.00 -27.36 225.29 -6.34 -33.70 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -1.73 Total: 15.91 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.06 Total: -16.25 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.66 Total: -53.37 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.08 Total: 18.87 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.52 Total: -2.25 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -27.36 -6.34 -33.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619301.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.490 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds