Wall clock time and date at job start Mon Mar 30 2020 02:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00055 * 2 1 4 4 H 1.48491 * 109.47021 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.46977 * 119.99922 * 3 2 1 6 6 H 1.48500 * 109.46905 * 239.99765 * 3 2 1 7 7 C 1.37884 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99795 * 185.84461 * 7 2 1 9 9 C 1.50698 * 120.00149 * 5.84191 * 7 2 1 10 10 H 1.09008 * 109.46910 * 35.28156 * 9 7 2 11 11 N 1.46897 * 109.47006 * 275.28602 * 9 7 2 12 12 C 1.50699 * 109.47136 * 155.27924 * 9 7 2 13 13 C 1.34815 * 125.88691 * 245.00174 * 12 9 7 14 14 C 1.40932 * 107.43254 * 180.02562 * 13 12 9 15 15 C 1.34966 * 107.41810 * 359.97438 * 14 13 12 16 16 Cl 1.73596 * 125.89723 * 179.97438 * 15 14 13 17 17 N 1.36349 * 108.20692 * 359.73951 * 15 14 13 18 18 H 0.97000 * 125.64828 * 180.29939 * 17 15 14 19 19 H 0.96999 * 120.00095 * 175.09032 * 1 2 3 20 20 H 1.00905 * 110.99840 * 295.37341 * 11 9 7 21 21 H 1.00899 * 111.00679 * 59.32809 * 11 9 7 22 22 H 1.07998 * 126.28623 * 0.02562 * 13 12 9 23 23 H 1.07996 * 126.29131 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0803 -1.1965 0.0958 9 6 1.2569 -2.4959 -0.1317 10 1 0.4043 -2.3592 -0.7970 11 7 0.7823 -2.9244 1.1907 12 6 2.1749 -3.5468 -0.7009 13 6 2.0357 -4.1541 -1.8965 14 6 3.1032 -5.0638 -2.0348 15 6 3.8552 -4.9771 -0.9174 16 17 5.2925 -5.8919 -0.5843 17 7 3.2940 -4.0432 -0.0976 18 1 3.6327 -3.7774 0.7717 19 1 -0.4850 -0.8369 -0.0719 20 1 1.5569 -3.1305 1.8036 21 1 0.1731 -2.2311 1.5985 22 1 1.2503 -3.9762 -2.6161 23 1 3.2859 -5.7112 -2.8796 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238619301.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:22 Heat of formation + Delta-G solvation = 3.872864 kcal Electronic energy + Delta-G solvation = -10607.263914 eV Core-core repulsion = 8480.554949 eV Total energy + Delta-G solvation = -2126.708964 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.05817 -37.67701 -36.79075 -33.35313 -31.97445 -29.72132 -27.23796 -24.16059 -21.55596 -21.30685 -19.50796 -18.43178 -16.53657 -15.76219 -15.70116 -15.19001 -14.67071 -14.57804 -14.22314 -13.80677 -13.17106 -12.64867 -12.61527 -12.37110 -12.04469 -11.90174 -11.48368 -10.75202 -9.89573 -9.46924 -8.91077 -8.55118 -6.48158 0.78030 1.19390 1.51380 1.56921 1.76816 1.97802 2.50699 2.57147 3.10728 3.99304 4.36767 4.45442 4.56033 4.93275 5.12021 5.28778 5.63449 5.97238 5.99516 6.13049 6.42122 6.43846 6.54641 6.72736 7.31665 8.66912 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.048904 B = 0.009495 C = 0.008831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.408635 B = 2948.172465 C = 3169.728829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 1.112 2.888 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.636 4.636 8 H 0.042 0.958 9 C 0.252 3.748 10 H 0.038 0.962 11 N -0.842 5.842 12 C 0.085 3.915 13 C -0.230 4.230 14 C -0.168 4.168 15 C 0.034 3.966 16 Cl -0.016 7.016 17 N -0.541 5.541 18 H 0.417 0.583 19 H 0.263 0.737 20 H 0.324 0.676 21 H 0.333 0.667 22 H 0.138 0.862 23 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.846 -7.439 -0.474 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.216 4.216 3 Si 0.935 3.065 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.676 4.676 8 H 0.060 0.940 9 C 0.142 3.858 10 H 0.056 0.944 11 N -0.369 5.369 12 C -0.030 4.030 13 C -0.254 4.254 14 C -0.195 4.195 15 C -0.103 4.103 16 Cl 0.012 6.988 17 N -0.139 5.139 18 H 0.255 0.745 19 H 0.074 0.926 20 H 0.135 0.865 21 H 0.144 0.856 22 H 0.156 0.844 23 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.485 -6.498 -0.648 9.933 hybrid contribution 0.798 -0.707 0.652 1.250 sum 8.283 -7.205 0.004 10.979 Atomic orbital electron populations 1.70945 1.07540 1.30925 1.46529 1.27110 0.96500 1.05950 0.92011 0.82962 0.74173 0.71849 0.77550 1.20876 1.19800 1.20336 1.22760 0.94978 0.93584 1.56283 0.93983 1.17657 0.91214 0.88156 0.88731 0.94393 1.59503 1.22682 1.49215 1.05496 1.20688 0.89370 0.98121 0.94813 1.20788 1.03249 1.03040 0.98333 1.20808 0.96341 1.04098 0.98204 1.20823 0.94874 0.99485 0.95093 1.98334 1.34185 1.70663 1.95625 1.41797 1.21705 1.32016 1.18395 0.74534 0.92572 0.86546 0.85574 0.84375 0.81859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 13.63 21.45 0.29 -51.99 14 2 C -0.01 -0.75 5.45 84.66 0.46 -0.29 14 3 Si 1.11 47.80 29.91 68.60 2.05 49.85 14 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 14 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 14 6 H -0.28 -11.48 7.11 99.48 0.71 -10.77 14 7 C -0.64 -33.12 8.58 25.60 0.22 -32.90 14 8 H 0.04 2.20 7.81 -2.91 -0.02 2.18 14 9 C 0.25 12.11 2.82 43.42 0.12 12.24 14 10 H 0.04 2.04 6.93 -2.38 -0.02 2.02 14 11 N -0.84 -36.71 9.24 -174.95 -1.62 -38.32 14 12 C 0.09 3.65 5.91 41.05 0.24 3.89 14 13 C -0.23 -9.14 10.74 22.14 0.24 -8.91 14 14 C -0.17 -5.73 10.84 22.18 0.24 -5.49 14 15 C 0.03 1.15 7.78 83.24 0.65 1.79 14 16 Cl -0.02 -0.43 29.31 -2.72 -0.08 -0.51 14 17 N -0.54 -19.85 6.05 -173.87 -1.05 -20.90 14 18 H 0.42 13.96 8.96 -92.71 -0.83 13.13 14 19 H 0.26 15.00 6.38 -92.71 -0.59 14.41 14 20 H 0.32 12.95 8.94 -89.69 -0.80 12.14 14 21 H 0.33 15.20 8.60 -89.69 -0.77 14.43 14 22 H 0.14 5.25 8.06 -2.91 -0.02 5.22 14 23 H 0.16 4.53 8.06 -2.91 -0.02 4.51 14 Total: -1.00 -56.85 225.29 0.81 -56.04 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.96 Total: 35.49 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 2.17 Total: -29.66 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -2.38 Total: -111.21 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.05 Total: 49.85 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -56.85 0.81 -56.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619301.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.915 kcal (2) G-P(sol) polarization free energy of solvation -56.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds