Wall clock time and date at job start Mon Mar 30 2020 02:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86802 * 119.99574 * 2 1 4 4 H 1.48498 * 109.46890 * 270.00073 * 3 2 1 5 5 H 1.48493 * 109.47596 * 30.00342 * 3 2 1 6 6 H 1.48506 * 109.46875 * 150.00584 * 3 2 1 7 7 C 1.39864 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99808 * 196.50409 * 7 2 1 9 9 C 1.41121 * 120.00082 * 16.78044 * 7 2 1 10 10 C 1.40823 * 120.18915 * 25.59515 * 9 7 2 11 11 C 1.36477 * 119.93794 * 179.97438 * 10 9 7 12 12 F 1.35099 * 119.83314 * 180.02562 * 11 10 9 13 13 C 1.39623 * 120.33631 * 359.97438 * 11 10 9 14 14 O 1.35720 * 119.80576 * 180.02562 * 13 11 10 15 15 C 1.39083 * 120.38352 * 0.04213 * 13 11 10 16 16 C 1.37784 * 120.05812 * 359.67379 * 15 13 11 17 17 F 1.35094 * 120.16761 * 180.32070 * 16 15 13 18 18 H 0.96993 * 120.00043 * 359.97438 * 1 2 3 19 19 H 1.08002 * 120.03209 * 0.02925 * 10 9 7 20 20 H 0.96698 * 113.99462 * 89.99904 * 14 13 11 21 21 H 1.08003 * 119.97338 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0465 -1.4001 5 1 1.4406 2.6527 0.7001 6 1 3.5407 1.4403 0.7000 7 6 2.0085 -1.2112 -0.0005 8 1 3.0552 -1.2306 0.2652 9 6 1.3480 -2.4072 -0.3539 10 6 0.2175 -2.3706 -1.1929 11 6 -0.4170 -3.5304 -1.5318 12 9 -1.5010 -3.4929 -2.3372 13 6 0.0491 -4.7557 -1.0512 14 8 -0.5898 -5.9025 -1.3955 15 6 1.1641 -4.8077 -0.2215 16 6 1.8205 -3.6472 0.1261 17 9 2.9076 -3.6957 0.9266 18 1 -0.4850 0.8400 0.0004 19 1 -0.1464 -1.4257 -1.5685 20 1 -0.2522 -6.3135 -2.2030 21 1 1.5187 -5.7591 0.1468 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238696064.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:13 Heat of formation + Delta-G solvation = -145.040801 kcal Electronic energy + Delta-G solvation = -12351.811781 eV Core-core repulsion = 9634.556005 eV Total energy + Delta-G solvation = -2717.255777 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.039 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.68240 -49.32428 -39.77697 -37.64892 -35.30765 -31.33481 -30.69276 -27.03225 -23.75906 -22.86327 -19.71971 -19.40915 -18.07443 -17.64885 -17.21856 -16.72710 -16.16702 -15.95233 -15.27560 -15.01078 -14.66266 -14.50744 -13.83278 -13.60337 -12.93902 -12.61915 -12.38816 -12.08606 -11.78496 -11.43954 -11.12124 -9.68388 -9.30211 -8.85110 -6.58378 0.41605 0.56616 1.37661 1.44639 1.53310 2.14132 2.37987 3.19793 3.36017 3.61773 4.00496 4.14012 4.71957 4.76227 5.04487 5.15341 5.41493 5.47462 5.73264 5.88802 6.29329 6.53145 6.58153 7.03447 8.09819 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.012985 C = 0.010201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.675042 B = 2155.789638 C = 2744.111996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.036 3.964 3 Si 0.995 3.005 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.468 4.468 8 H 0.089 0.911 9 C 0.076 3.924 10 C -0.193 4.193 11 C 0.082 3.918 12 F -0.154 7.154 13 C -0.045 4.045 14 O -0.492 6.492 15 C -0.104 4.104 16 C -0.046 4.046 17 F -0.157 7.157 18 H 0.299 0.701 19 H 0.128 0.872 20 H 0.389 0.611 21 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -0.968 -2.346 3.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.183 4.183 3 Si 0.814 3.186 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.496 4.496 8 H 0.107 0.893 9 C 0.073 3.927 10 C -0.213 4.213 11 C 0.062 3.938 12 F -0.133 7.133 13 C -0.091 4.091 14 O -0.302 6.302 15 C -0.123 4.123 16 C -0.066 4.066 17 F -0.136 7.136 18 H 0.110 0.890 19 H 0.146 0.854 20 H 0.244 0.756 21 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.562 -0.713 -1.818 2.500 hybrid contribution 0.338 0.462 -0.374 0.684 sum 1.899 -0.251 -2.192 2.911 Atomic orbital electron populations 1.69849 1.09268 1.31935 1.32014 1.26951 0.95586 1.05096 0.90618 0.85001 0.78964 0.74653 0.80030 1.18015 1.18756 1.17947 1.19847 0.98489 0.91713 1.39506 0.89282 1.17714 0.92081 0.92370 0.90568 1.20714 1.00514 0.96525 1.03563 1.17938 0.86466 0.94997 0.94395 1.91346 1.52936 1.97517 1.71544 1.17503 0.98975 0.84196 1.08448 1.84784 1.60561 1.36581 1.48270 1.20809 0.94593 0.97607 0.99323 1.17690 0.91567 0.94742 1.02607 1.91283 1.52736 1.97260 1.72298 0.88962 0.85397 0.75602 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.82 10.96 21.82 0.24 -39.58 14 2 C 0.04 1.68 5.15 85.22 0.44 2.12 14 3 Si 0.99 35.39 29.59 68.60 2.03 37.42 14 4 H -0.26 -8.74 7.11 99.48 0.71 -8.03 14 5 H -0.26 -8.85 7.11 99.48 0.71 -8.14 14 6 H -0.26 -8.94 7.11 99.48 0.71 -8.24 14 7 C -0.47 -24.11 8.76 23.37 0.20 -23.91 14 8 H 0.09 4.46 7.74 -2.91 -0.02 4.44 14 9 C 0.08 4.02 5.57 -21.24 -0.12 3.90 14 10 C -0.19 -9.95 8.59 22.49 0.19 -9.76 14 11 C 0.08 3.95 7.25 22.19 0.16 4.11 14 12 F -0.15 -7.17 17.09 44.97 0.77 -6.40 14 13 C -0.04 -1.98 6.73 22.81 0.15 -1.83 14 14 O -0.49 -18.60 13.34 -90.42 -1.21 -19.80 14 15 C -0.10 -4.53 9.95 22.37 0.22 -4.31 14 16 C -0.05 -2.24 7.30 22.87 0.17 -2.07 14 17 F -0.16 -7.51 16.72 44.97 0.75 -6.76 14 18 H 0.30 13.12 8.30 -92.71 -0.77 12.35 14 19 H 0.13 6.81 6.19 -2.91 -0.02 6.79 14 20 H 0.39 10.40 9.06 -74.06 -0.67 9.73 14 21 H 0.15 5.44 8.06 -2.91 -0.02 5.41 14 Total: -1.00 -57.19 207.67 4.62 -52.57 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.62 Total: 14.31 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 1.42 Total: -31.75 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.24 Total: -39.58 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -1.21 Total: -19.80 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 1.52 Total: -13.17 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Total: -57.19 4.62 -52.57 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238696064.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.472 kcal (2) G-P(sol) polarization free energy of solvation -57.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds