Wall clock time and date at job start Mon Mar 30 2020 02:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46852 * 110.99412 * 2 1 4 4 C 1.53038 * 109.51870 * 185.84437 * 3 2 1 5 5 C 1.53119 * 109.27882 * 300.81814 * 4 3 2 6 6 H 1.09002 * 109.52432 * 177.56139 * 5 4 3 7 7 O 1.42901 * 109.57407 * 297.72335 * 5 4 3 8 8 C 1.53117 * 109.15738 * 57.65786 * 5 4 3 9 9 H 1.08998 * 109.50586 * 62.29144 * 8 5 4 10 10 C 1.53009 * 109.50025 * 182.36633 * 8 5 4 11 11 C 1.50696 * 109.46813 * 185.00145 * 10 8 5 12 12 H 1.07997 * 120.00802 * 359.97438 * 11 10 8 13 13 C 1.37882 * 119.99831 * 180.02562 * 11 10 8 14 14 N 1.31511 * 119.99950 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00015 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46911 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47191 * 119.99385 * 15 13 11 18 18 H 1.48499 * 109.47047 * 239.99812 * 15 13 11 19 19 C 1.46845 * 111.00532 * 124.20993 * 2 1 3 20 20 H 1.08997 * 109.46942 * 295.78387 * 1 2 3 21 21 H 1.08993 * 109.47765 * 55.78676 * 1 2 3 22 22 H 1.09005 * 109.46991 * 175.79296 * 1 2 3 23 23 H 1.09000 * 109.45912 * 305.85743 * 3 2 1 24 24 H 1.08994 * 109.46352 * 65.83536 * 3 2 1 25 25 H 1.09008 * 109.50069 * 180.87836 * 4 3 2 26 26 H 1.08998 * 109.50473 * 60.76141 * 4 3 2 27 27 H 0.96704 * 113.99540 * 299.83738 * 7 5 4 28 28 H 1.08998 * 109.46809 * 304.99567 * 10 8 5 29 29 H 1.08993 * 109.47098 * 65.00021 * 10 8 5 30 30 H 0.97001 * 119.99669 * 180.02562 * 14 13 11 31 31 H 1.09004 * 109.45875 * 54.14353 * 19 2 1 32 32 H 1.08999 * 109.45709 * 294.17753 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 -0.1469 5 6 4.1188 0.5372 1.0142 6 1 5.1998 0.4716 0.8903 7 8 3.8184 1.1901 2.2493 8 6 3.5182 -0.8713 1.0206 9 1 3.7815 -1.3834 0.0952 10 6 4.0690 -1.6560 2.2131 11 6 3.5743 -3.0781 2.1503 12 1 2.9311 -3.3909 1.3411 13 6 3.9421 -3.9797 3.1265 14 7 4.7250 -3.5987 4.1122 15 14 3.3283 -5.7423 3.0490 16 1 2.4684 -5.9147 1.8507 17 1 4.4873 -6.6667 2.9643 18 1 2.5408 -6.0463 4.2707 19 6 1.9954 -0.7707 1.1337 20 1 -0.3633 0.4470 0.9253 21 1 -0.3634 0.5778 -0.8497 22 1 -0.3633 -1.0249 -0.0754 23 1 1.5632 1.9257 -0.8330 24 1 1.7325 1.8608 0.9376 25 1 3.9098 2.3515 -0.1312 26 1 3.7812 0.8569 -1.0907 27 1 4.1676 2.0896 2.3137 28 1 5.1585 -1.6486 2.1809 29 1 3.7297 -1.1939 3.1401 30 1 4.9840 -4.2331 4.7987 31 1 1.5636 -1.7715 1.1242 32 1 1.7326 -0.2708 2.0659 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250660060.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:00 Heat of formation + Delta-G solvation = -86.216338 kcal Electronic energy + Delta-G solvation = -13435.215124 eV Core-core repulsion = 11200.982534 eV Total energy + Delta-G solvation = -2234.232590 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.44655 -36.97965 -35.63296 -33.46100 -32.30848 -28.69815 -27.36195 -25.33142 -23.62919 -22.17732 -20.51156 -18.46426 -17.71707 -16.90064 -16.37028 -16.07493 -15.55585 -15.40111 -14.61904 -14.41014 -13.85078 -13.50205 -13.33084 -13.17619 -12.78456 -12.60236 -12.50175 -12.30610 -12.11871 -11.73829 -11.58437 -11.29408 -10.75454 -10.54014 -10.52105 -9.21655 -8.17029 -6.27306 1.39176 1.39443 1.53046 2.41809 3.05737 3.16992 3.55569 3.90729 3.97596 4.17357 4.27597 4.45320 4.57922 4.64844 4.69080 4.74576 4.93040 4.99409 4.99911 5.05812 5.21713 5.30027 5.31327 5.50206 5.77366 5.90484 6.16683 6.26778 6.28362 6.88181 7.05594 7.40994 8.95097 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042072 B = 0.010361 C = 0.008859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.361693 B = 2701.867512 C = 3159.989672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.555 5.555 3 C 0.059 3.941 4 C -0.138 4.138 5 C 0.104 3.896 6 H 0.050 0.950 7 O -0.578 6.578 8 C -0.067 4.067 9 H 0.070 0.930 10 C 0.044 3.956 11 C -0.532 4.532 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.962 3.038 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.280 1.280 19 C 0.089 3.911 20 H 0.019 0.981 21 H 0.089 0.911 22 H 0.064 0.936 23 H 0.094 0.906 24 H 0.027 0.973 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.385 0.615 28 H -0.014 1.014 29 H -0.012 1.012 30 H 0.262 0.738 31 H 0.058 0.942 32 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 10.175 -8.947 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.279 5.279 3 C -0.068 4.068 4 C -0.175 4.175 5 C 0.045 3.955 6 H 0.068 0.932 7 O -0.385 6.385 8 C -0.085 4.085 9 H 0.088 0.912 10 C 0.006 3.994 11 C -0.570 4.570 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.787 3.213 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.206 1.206 19 C -0.038 4.038 20 H 0.037 0.963 21 H 0.108 0.892 22 H 0.083 0.917 23 H 0.113 0.887 24 H 0.045 0.955 25 H 0.115 0.885 26 H 0.099 0.901 27 H 0.233 0.767 28 H 0.004 0.996 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -5.165 9.327 -9.120 14.030 hybrid contribution 0.030 -0.185 1.172 1.187 sum -5.134 9.142 -7.948 13.157 Atomic orbital electron populations 1.22382 0.86558 1.02458 1.00795 1.62027 1.08500 1.14325 1.43082 1.22062 0.95464 0.88689 1.00623 1.22252 0.95341 1.01300 0.98649 1.21927 0.97334 0.92320 0.83876 0.93198 1.86626 1.80754 1.32908 1.38236 1.21138 0.94611 0.93767 0.99024 0.91151 1.18828 0.93868 0.93743 0.92950 1.21707 1.29785 0.96353 1.09190 0.92150 1.25983 0.95387 1.03553 0.95059 1.70130 1.37121 1.36560 1.13724 0.85439 0.78304 0.79248 0.78321 1.18489 1.20301 1.20568 1.21706 0.95057 0.96871 0.90208 0.96270 0.89197 0.91749 0.88745 0.95455 0.88485 0.90103 0.76708 0.99589 0.99328 0.92950 0.92396 0.97047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.59 127.69 1.22 1.92 16 2 N -0.55 -18.12 4.91 -922.59 -4.53 -22.65 16 3 C 0.06 1.60 5.33 86.32 0.46 2.06 16 4 C -0.14 -3.55 5.80 30.65 0.18 -3.38 16 5 C 0.10 3.64 3.26 30.67 0.10 3.74 16 6 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 7 O -0.58 -20.71 11.52 -148.98 -1.72 -22.43 16 8 C -0.07 -2.92 2.13 -10.74 -0.02 -2.94 16 9 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 10 C 0.04 2.44 4.21 29.85 0.13 2.56 16 11 C -0.53 -31.29 8.42 25.60 0.22 -31.07 16 12 H 0.06 3.42 7.07 -2.91 -0.02 3.40 16 13 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 14 N -0.93 -58.94 13.29 21.45 0.28 -58.66 16 15 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 16 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 C 0.09 3.72 4.41 86.32 0.38 4.10 16 20 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 21 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 22 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.09 2.00 8.09 -2.39 -0.02 1.98 16 24 H 0.03 0.79 7.76 -2.39 -0.02 0.77 16 25 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.38 9.27 9.09 -74.05 -0.67 8.59 16 28 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H -0.01 -0.73 7.79 -2.39 -0.02 -0.75 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.06 2.61 6.97 -2.38 -0.02 2.59 16 32 H 0.01 0.52 7.76 -2.39 -0.02 0.50 16 Total: -1.00 -70.17 257.10 -0.40 -70.57 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.41 Total: 8.19 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 3.12 Total: -22.70 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -4.25 Total: -81.30 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.72 Total: -22.43 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -70.17 -0.40 -70.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250660060.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.645 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds