Wall clock time and date at job start Mon Mar 30 2020 02:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86795 * 120.00176 * 2 1 4 4 H 1.48503 * 109.47365 * 274.70141 * 3 2 1 5 5 H 1.48509 * 109.47213 * 34.70191 * 3 2 1 6 6 H 1.48500 * 109.47083 * 154.69948 * 3 2 1 7 7 C 1.39891 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00117 * 29.91467 * 7 2 1 9 9 C 1.41213 * 119.99600 * 210.19183 * 7 2 1 10 10 C 1.40741 * 120.20887 * 213.79904 * 9 7 2 11 11 C 1.37836 * 119.75490 * 179.73723 * 10 9 7 12 12 O 1.35975 * 119.90878 * 180.25020 * 11 10 9 13 13 C 1.39545 * 120.18327 * 0.54374 * 11 10 9 14 14 F 1.35099 * 119.78254 * 179.69163 * 13 11 10 15 15 C 1.38651 * 120.43271 * 359.71241 * 13 11 10 16 16 C 1.37908 * 120.24267 * 0.02562 * 15 13 11 17 17 F 1.35098 * 120.09966 * 179.97438 * 16 15 13 18 18 H 0.97004 * 120.00085 * 0.02562 * 1 2 3 19 19 H 1.08005 * 120.12506 * 0.02562 * 10 9 7 20 20 H 0.96696 * 114.00764 * 270.28794 * 12 11 10 21 21 H 1.07998 * 119.88119 * 180.02562 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3911 2.1038 -1.3954 5 1 1.4936 2.6220 0.7971 6 1 3.5866 1.4134 0.5983 7 6 2.0083 -1.2115 -0.0005 8 1 1.5762 -2.0843 -0.4673 9 6 3.2767 -1.2947 0.6145 10 6 4.2669 -2.1424 0.0836 11 6 5.5036 -2.2123 0.6882 12 8 6.4642 -3.0264 0.1750 13 6 5.7705 -1.4545 1.8292 14 9 6.9834 -1.5340 2.4189 15 6 4.7990 -0.6210 2.3618 16 6 3.5574 -0.5333 1.7680 17 9 2.6127 0.2794 2.2898 18 1 -0.4850 0.8401 -0.0004 19 1 4.0600 -2.7325 -0.7971 20 1 6.4522 -3.9241 0.5341 21 1 5.0153 -0.0382 3.2449 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258010004.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:24 Heat of formation + Delta-G solvation = -136.098950 kcal Electronic energy + Delta-G solvation = -12526.528937 eV Core-core repulsion = 9809.660908 eV Total energy + Delta-G solvation = -2716.868029 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.039 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.74304 -49.52114 -39.91994 -37.49801 -35.49441 -32.27346 -30.23522 -27.01914 -23.65949 -22.98046 -20.25580 -18.92199 -18.77133 -17.69132 -17.36172 -16.72641 -16.17685 -15.82250 -15.66338 -15.20865 -14.87632 -14.62242 -13.88965 -13.52661 -13.32513 -12.65697 -12.43012 -12.08265 -11.72880 -11.44657 -11.08313 -9.80976 -9.29858 -9.10005 -6.61580 0.27205 0.37974 1.26451 1.34429 1.40655 2.07423 2.26550 3.00841 3.23481 3.46407 3.90814 3.97546 4.55069 4.60954 4.95415 5.19500 5.29113 5.39250 5.57909 5.83760 6.09273 6.41534 6.55066 6.91032 7.94018 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.050164 B = 0.013910 C = 0.012327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.035638 B = 2012.418048 C = 2270.808004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.065 3.935 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.477 4.477 8 H 0.082 0.918 9 C 0.058 3.942 10 C -0.198 4.198 11 C 0.114 3.886 12 O -0.500 6.500 13 C -0.045 4.045 14 F -0.151 7.151 15 C -0.123 4.123 16 C -0.026 4.026 17 F -0.149 7.149 18 H 0.300 0.700 19 H 0.138 0.862 20 H 0.407 0.593 21 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.039 -0.787 1.744 6.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.156 4.156 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.504 4.504 8 H 0.100 0.900 9 C 0.054 3.946 10 C -0.217 4.217 11 C 0.069 3.931 12 O -0.313 6.313 13 C -0.066 4.066 14 F -0.130 7.130 15 C -0.143 4.143 16 C -0.046 4.046 17 F -0.128 7.128 18 H 0.111 0.889 19 H 0.156 0.844 20 H 0.266 0.734 21 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.891 -0.201 1.452 6.071 hybrid contribution -0.232 0.264 0.433 0.558 sum 5.660 0.063 1.886 5.966 Atomic orbital electron populations 1.69789 1.09343 1.32305 1.31250 1.26830 0.95117 1.04243 0.89430 0.85565 0.81279 0.76911 0.78029 1.20282 1.18903 1.18023 1.19329 0.99398 0.98237 1.33423 0.90006 1.17710 0.93574 0.92535 0.90751 1.21122 0.90673 1.07128 1.02815 1.18182 0.88569 0.94772 0.91581 1.84725 1.52496 1.26861 1.67188 1.17296 0.82634 1.08782 0.97877 1.91346 1.41850 1.96094 1.83706 1.20605 0.91472 1.00473 1.01718 1.17516 0.87521 1.02210 0.97376 1.91013 1.64550 1.71073 1.86153 0.88899 0.84394 0.73428 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.53 13.93 21.82 0.30 -41.23 14 2 C 0.07 3.33 4.70 85.23 0.40 3.73 14 3 Si 0.96 42.36 25.28 68.60 1.73 44.10 14 4 H -0.28 -11.60 7.11 99.48 0.71 -10.90 14 5 H -0.26 -11.09 7.11 99.48 0.71 -10.38 14 6 H -0.26 -11.67 5.44 99.48 0.54 -11.13 14 7 C -0.48 -24.93 9.38 23.40 0.22 -24.71 14 8 H 0.08 4.44 8.06 -2.91 -0.02 4.41 14 9 C 0.06 2.80 4.89 -21.25 -0.10 2.70 14 10 C -0.20 -8.45 9.71 22.79 0.22 -8.23 14 11 C 0.11 4.55 6.70 22.49 0.15 4.70 14 12 O -0.50 -16.70 13.35 -93.27 -1.25 -17.95 14 13 C -0.05 -1.86 7.33 22.68 0.17 -1.69 14 14 F -0.15 -5.87 17.10 44.97 0.77 -5.10 14 15 C -0.12 -5.15 9.97 22.29 0.22 -4.93 14 16 C -0.03 -1.23 5.05 22.88 0.12 -1.11 14 17 F -0.15 -7.16 12.74 44.97 0.57 -6.58 14 18 H 0.30 13.89 8.30 -92.71 -0.77 13.12 14 19 H 0.14 5.44 8.06 -2.91 -0.02 5.42 14 20 H 0.41 9.06 9.06 -74.06 -0.67 8.38 14 21 H 0.15 5.30 8.06 -2.91 -0.02 5.28 14 Total: -1.00 -56.07 201.34 3.97 -52.10 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 0.44 Total: 4.21 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 1.39 Total: -29.54 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.30 Total: -41.23 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.25 Total: -17.95 kcal Atomic # 9 Polarization: -13.03 SS G_CDS: 1.34 Total: -11.69 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.73 Total: 44.10 kcal Total: -56.07 3.97 -52.10 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258010004.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.000 kcal (2) G-P(sol) polarization free energy of solvation -56.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds