Wall clock time and date at job start Mon Mar 30 2020 02:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47802 * 111.00395 * 2 1 4 4 C 1.45851 * 112.92250 * 206.13599 * 3 2 1 5 5 C 1.54510 * 111.59146 * 298.67870 * 4 3 2 6 6 H 1.09004 * 109.57281 * 317.36816 * 5 4 3 7 7 O 1.42905 * 109.67883 * 197.05715 * 5 4 3 8 8 C 1.50463 * 108.85954 * 77.17994 * 5 4 3 9 9 H 1.09000 * 108.76577 * 28.64813 * 8 5 4 10 10 C 1.50701 * 108.77166 * 146.93113 * 8 5 4 11 11 H 1.07995 * 119.99675 * 5.42137 * 10 8 5 12 12 C 1.37870 * 120.00175 * 185.42091 * 10 8 5 13 13 N 1.31523 * 119.99592 * 5.13384 * 12 10 8 14 14 Si 1.86791 * 120.00319 * 185.13256 * 12 10 8 15 15 H 1.48501 * 109.47240 * 85.00037 * 14 12 10 16 16 H 1.48496 * 109.47214 * 324.99913 * 14 12 10 17 17 H 1.48500 * 109.47528 * 204.99949 * 14 12 10 18 18 C 1.54289 * 113.03395 * 267.85270 * 8 5 4 19 19 C 1.44280 * 110.99671 * 121.97891 * 2 1 3 20 20 H 1.09002 * 109.47105 * 63.95003 * 1 2 3 21 21 H 1.08997 * 109.47444 * 183.95745 * 1 2 3 22 22 H 1.09010 * 109.46905 * 303.95721 * 1 2 3 23 23 H 1.08998 * 108.79046 * 85.24895 * 3 2 1 24 24 H 1.09002 * 108.79079 * 327.03040 * 3 2 1 25 25 H 1.09004 * 109.06047 * 178.13350 * 4 3 2 26 26 H 1.09006 * 109.05880 * 59.21767 * 4 3 2 27 27 H 0.96702 * 114.00053 * 60.56574 * 7 5 4 28 28 H 0.97005 * 119.99410 * 180.02562 * 13 12 10 29 29 H 1.08998 * 108.91836 * 162.42287 * 18 8 5 30 30 H 1.09006 * 108.91860 * 280.97071 * 18 8 5 31 31 H 1.09000 * 108.97685 * 261.33007 * 19 2 1 32 32 H 1.08993 * 108.98071 * 20.12445 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3798 0.0000 4 6 3.3283 1.4779 -0.5917 5 6 4.3623 0.6379 0.1908 6 1 4.2056 0.7706 1.2614 7 8 5.6839 1.0573 -0.1551 8 6 4.1833 -0.8122 -0.1688 9 1 3.7874 -0.8758 -1.1823 10 6 5.5283 -1.4908 -0.1309 11 1 6.3973 -0.9484 0.2109 12 6 5.6493 -2.8041 -0.5326 13 7 4.6136 -3.4336 -1.0434 14 14 7.2841 -3.6894 -0.3515 15 1 7.3955 -4.2476 1.0201 16 1 8.3943 -2.7320 -0.5880 17 1 7.3623 -4.7925 -1.3426 18 6 3.2245 -1.5564 0.7838 19 6 1.9860 -0.7134 1.1426 20 1 -0.3633 0.4513 -0.9233 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3633 0.5741 0.8525 23 1 2.0448 1.7382 1.0283 24 1 1.3164 2.0179 -0.5616 25 1 3.6427 2.5216 -0.5896 26 1 3.2867 1.1221 -1.6213 27 1 5.8688 1.9841 0.0499 28 1 4.6987 -4.3578 -1.3257 29 1 2.8972 -2.4796 0.3055 30 1 3.7598 -1.8059 1.7001 31 1 2.2581 0.0052 1.9157 32 1 1.2095 -1.3731 1.5296 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258433765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:24 Heat of formation + Delta-G solvation = -43.963430 kcal Electronic energy + Delta-G solvation = -13709.162635 eV Core-core repulsion = 11476.762269 eV Total energy + Delta-G solvation = -2232.400366 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.77836 -35.89762 -33.35795 -31.59410 -30.77297 -27.33201 -24.92922 -23.55376 -22.55694 -20.06184 -18.51470 -16.78308 -15.78837 -15.11142 -14.61880 -14.48344 -14.04338 -13.41522 -12.90026 -12.74576 -12.43901 -11.94173 -11.37865 -11.02284 -10.98514 -10.94137 -10.68785 -10.47913 -10.28216 -9.81232 -9.63388 -9.06074 -8.84192 -8.44855 -8.14477 -7.66884 -5.77906 -3.76025 3.44099 3.49775 3.55181 4.40988 4.63268 5.19082 5.35551 5.52320 5.54596 5.60690 5.78153 5.80912 5.99458 6.07083 6.12238 6.20179 6.22362 6.43033 6.52662 6.85832 7.01773 7.20010 7.39493 7.59995 7.76615 7.94992 8.17141 8.29651 8.56477 8.84281 9.31456 9.85430 11.31129 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042795 B = 0.012282 C = 0.010255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.119263 B = 2279.300467 C = 2729.622981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.526 5.526 3 C 0.067 3.933 4 C -0.149 4.149 5 C 0.122 3.878 6 H 0.029 0.971 7 O -0.541 6.541 8 C 0.056 3.944 9 H 0.041 0.959 10 C -0.493 4.493 11 H 0.066 0.934 12 C 0.054 3.946 13 N -0.896 5.896 14 Si 0.886 3.114 15 H -0.284 1.284 16 H -0.276 1.276 17 H -0.291 1.291 18 C -0.091 4.091 19 C 0.050 3.950 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.015 0.985 23 H 0.027 0.973 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.343 0.657 28 H 0.255 0.745 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.024 0.976 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 8.188 3.395 10.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.250 5.250 3 C -0.061 4.061 4 C -0.187 4.187 5 C 0.063 3.937 6 H 0.046 0.954 7 O -0.343 6.343 8 C 0.037 3.963 9 H 0.059 0.941 10 C -0.531 4.531 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.715 3.285 15 H -0.210 1.210 16 H -0.201 1.201 17 H -0.217 1.217 18 C -0.129 4.129 19 C -0.078 4.078 20 H 0.081 0.919 21 H 0.085 0.915 22 H 0.034 0.966 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.186 0.814 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.047 7.122 2.682 9.720 hybrid contribution 0.413 0.413 1.004 1.161 sum -5.634 7.535 3.686 10.105 Atomic orbital electron populations 1.22442 0.88317 1.01454 0.99735 1.61614 1.06275 1.13353 1.43728 1.20868 0.96840 0.89489 0.98868 1.21359 0.95584 0.99186 1.02615 1.21659 0.79988 0.97597 0.94447 0.95356 1.86946 1.31758 1.28571 1.86979 1.18374 0.94816 0.86682 0.96392 0.94073 1.21242 0.94505 0.95661 1.41722 0.91546 1.24988 0.96022 0.97894 0.95610 1.69982 1.29601 1.11206 1.42767 0.86706 0.85090 0.79275 0.77455 1.21023 1.20124 1.21662 1.21970 0.92420 0.99424 0.99133 1.22244 0.98821 0.96777 0.89982 0.91949 0.91550 0.96629 0.95491 0.92380 0.92855 0.90679 0.81408 0.93498 0.90205 0.94011 0.95751 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.22 60.07 0.55 0.97 16 2 N -0.53 -9.59 4.48 -247.88 -1.11 -10.70 16 3 C 0.07 1.09 4.96 -6.71 -0.03 1.06 16 4 C -0.15 -2.69 5.19 -29.32 -0.15 -2.84 16 5 C 0.12 2.62 2.93 -27.21 -0.08 2.54 16 6 H 0.03 0.59 7.15 -51.93 -0.37 0.22 16 7 O -0.54 -11.76 11.27 -35.23 -0.40 -12.16 16 8 C 0.06 1.44 1.60 -92.36 -0.15 1.30 16 9 H 0.04 1.20 7.37 -51.93 -0.38 0.82 16 10 C -0.49 -14.29 7.83 -34.44 -0.27 -14.55 16 11 H 0.07 1.97 6.55 -52.49 -0.34 1.63 16 12 C 0.05 1.59 5.25 -17.82 -0.09 1.49 16 13 N -0.90 -26.83 11.88 55.43 0.66 -26.17 16 14 Si 0.89 22.52 29.54 -169.99 -5.02 17.49 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 18 C -0.09 -2.17 5.06 -25.50 -0.13 -2.30 16 19 C 0.05 0.96 5.17 -4.67 -0.02 0.94 16 20 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 21 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 22 H 0.02 0.20 8.14 -51.92 -0.42 -0.22 16 23 H 0.03 0.42 7.24 -51.93 -0.38 0.04 16 24 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 25 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 26 H 0.07 1.51 7.59 -51.93 -0.39 1.11 16 27 H 0.34 5.42 9.07 45.56 0.41 5.84 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.08 2.13 6.91 -51.93 -0.36 1.77 16 30 H 0.04 1.01 7.98 -51.93 -0.41 0.60 16 31 H 0.02 0.44 6.51 -51.93 -0.34 0.11 16 32 H 0.05 0.85 7.43 -51.93 -0.39 0.46 16 LS Contribution 247.88 15.07 3.74 3.74 Total: -1.00 -31.63 247.88 -6.68 -38.31 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.17 Total: 0.88 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.38 Total: -11.38 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.45 Total: -36.88 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.40 Total: -12.16 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.63 -6.68 -38.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258433765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.654 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds