Wall clock time and date at job start Mon Mar 30 2020 02:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47802 * 111.00395 * 2 1 4 4 C 1.45851 * 112.92250 * 206.13599 * 3 2 1 5 5 C 1.54510 * 111.59146 * 298.67870 * 4 3 2 6 6 H 1.09004 * 109.57281 * 317.36816 * 5 4 3 7 7 O 1.42905 * 109.67883 * 197.05715 * 5 4 3 8 8 C 1.50463 * 108.85954 * 77.17994 * 5 4 3 9 9 H 1.09000 * 108.76577 * 28.64813 * 8 5 4 10 10 C 1.50701 * 108.77166 * 146.93113 * 8 5 4 11 11 H 1.07995 * 119.99675 * 5.42137 * 10 8 5 12 12 C 1.37870 * 120.00175 * 185.42091 * 10 8 5 13 13 N 1.31523 * 119.99592 * 5.13384 * 12 10 8 14 14 Si 1.86791 * 120.00319 * 185.13256 * 12 10 8 15 15 H 1.48501 * 109.47240 * 85.00037 * 14 12 10 16 16 H 1.48496 * 109.47214 * 324.99913 * 14 12 10 17 17 H 1.48500 * 109.47528 * 204.99949 * 14 12 10 18 18 C 1.54289 * 113.03395 * 267.85270 * 8 5 4 19 19 C 1.44280 * 110.99671 * 121.97891 * 2 1 3 20 20 H 1.09002 * 109.47105 * 63.95003 * 1 2 3 21 21 H 1.08997 * 109.47444 * 183.95745 * 1 2 3 22 22 H 1.09010 * 109.46905 * 303.95721 * 1 2 3 23 23 H 1.08998 * 108.79046 * 85.24895 * 3 2 1 24 24 H 1.09002 * 108.79079 * 327.03040 * 3 2 1 25 25 H 1.09004 * 109.06047 * 178.13350 * 4 3 2 26 26 H 1.09006 * 109.05880 * 59.21767 * 4 3 2 27 27 H 0.96702 * 114.00053 * 60.56574 * 7 5 4 28 28 H 0.97005 * 119.99410 * 180.02562 * 13 12 10 29 29 H 1.08998 * 108.91836 * 162.42287 * 18 8 5 30 30 H 1.09006 * 108.91860 * 280.97071 * 18 8 5 31 31 H 1.09000 * 108.97685 * 261.33007 * 19 2 1 32 32 H 1.08993 * 108.98071 * 20.12445 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3798 0.0000 4 6 3.3283 1.4779 -0.5917 5 6 4.3623 0.6379 0.1908 6 1 4.2056 0.7706 1.2614 7 8 5.6839 1.0573 -0.1551 8 6 4.1833 -0.8122 -0.1688 9 1 3.7874 -0.8758 -1.1823 10 6 5.5283 -1.4908 -0.1309 11 1 6.3973 -0.9484 0.2109 12 6 5.6493 -2.8041 -0.5326 13 7 4.6136 -3.4336 -1.0434 14 14 7.2841 -3.6894 -0.3515 15 1 7.3955 -4.2476 1.0201 16 1 8.3943 -2.7320 -0.5880 17 1 7.3623 -4.7925 -1.3426 18 6 3.2245 -1.5564 0.7838 19 6 1.9860 -0.7134 1.1426 20 1 -0.3633 0.4513 -0.9233 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3633 0.5741 0.8525 23 1 2.0448 1.7382 1.0283 24 1 1.3164 2.0179 -0.5616 25 1 3.6427 2.5216 -0.5896 26 1 3.2867 1.1221 -1.6213 27 1 5.8688 1.9841 0.0499 28 1 4.6987 -4.3578 -1.3257 29 1 2.8972 -2.4796 0.3055 30 1 3.7598 -1.8059 1.7001 31 1 2.2581 0.0052 1.9157 32 1 1.2095 -1.3731 1.5296 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258433765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:24 Heat of formation + Delta-G solvation = -68.441637 kcal Electronic energy + Delta-G solvation = -13710.224090 eV Core-core repulsion = 11476.762269 eV Total energy + Delta-G solvation = -2233.461821 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.30734 -37.46626 -35.37325 -33.09810 -32.68147 -29.01045 -26.65496 -25.09818 -24.33727 -21.51601 -20.35706 -18.59041 -17.70163 -16.84117 -16.28730 -15.95113 -15.60372 -15.19094 -14.53779 -14.16039 -14.00182 -13.40538 -13.20119 -12.89808 -12.87280 -12.51413 -12.21512 -12.18135 -11.99651 -11.65494 -11.51665 -10.87914 -10.70419 -10.45257 -10.19474 -9.04956 -8.00299 -6.05838 1.40470 1.41364 1.51914 2.49761 3.11935 3.25659 3.81291 3.96939 4.18456 4.26105 4.45137 4.51303 4.55027 4.64119 4.80302 4.82044 4.86516 5.02446 5.05527 5.13061 5.36129 5.43565 5.54289 5.80891 6.07644 6.13138 6.34296 6.39188 6.53632 7.04929 7.30603 7.62269 9.07167 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042795 B = 0.012282 C = 0.010255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.119263 B = 2279.300467 C = 2729.622981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.559 5.559 3 C 0.064 3.936 4 C -0.138 4.138 5 C 0.122 3.878 6 H 0.039 0.961 7 O -0.569 6.569 8 C 0.058 3.942 9 H -0.004 1.004 10 C -0.512 4.512 11 H 0.056 0.944 12 C 0.004 3.996 13 N -0.923 5.923 14 Si 0.947 3.053 15 H -0.274 1.274 16 H -0.274 1.274 17 H -0.286 1.286 18 C -0.083 4.083 19 C 0.063 3.937 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.038 0.962 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.371 0.629 28 H 0.255 0.745 29 H 0.041 0.959 30 H 0.027 0.973 31 H 0.041 0.959 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.727 9.740 4.251 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.284 5.284 3 C -0.063 4.063 4 C -0.176 4.176 5 C 0.064 3.936 6 H 0.057 0.943 7 O -0.374 6.374 8 C 0.039 3.961 9 H 0.014 0.986 10 C -0.551 4.551 11 H 0.074 0.926 12 C -0.193 4.193 13 N -0.564 5.564 14 Si 0.774 3.226 15 H -0.200 1.200 16 H -0.199 1.199 17 H -0.212 1.212 18 C -0.122 4.122 19 C -0.066 4.066 20 H 0.094 0.906 21 H 0.081 0.919 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.587 8.703 3.545 11.476 hybrid contribution 0.603 -0.043 0.699 0.924 sum -5.985 8.660 4.244 11.350 Atomic orbital electron populations 1.22463 0.85844 1.01929 1.01424 1.61461 1.08710 1.14714 1.43481 1.20922 0.96198 0.88916 1.00231 1.21253 0.95751 1.00350 1.00236 1.21512 0.81072 0.95546 0.95505 0.94293 1.86845 1.32108 1.31205 1.87276 1.18288 0.93455 0.89883 0.94445 0.98619 1.21597 0.95768 0.96197 1.41519 0.92608 1.25744 0.99374 0.98739 0.95482 1.70125 1.31418 1.11317 1.43528 0.85737 0.81022 0.78064 0.77799 1.19989 1.19921 1.21207 1.21738 0.94309 0.98730 0.97438 1.21973 0.96892 0.96936 0.90782 0.90629 0.91897 0.94325 0.93670 0.89541 0.89141 0.93605 0.78264 0.93599 0.93999 0.95401 0.94079 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.22 127.69 1.18 1.98 16 2 N -0.56 -19.33 4.48 -938.14 -4.21 -23.53 16 3 C 0.06 1.89 4.96 83.94 0.42 2.31 16 4 C -0.14 -4.67 5.19 28.92 0.15 -4.52 16 5 C 0.12 5.15 2.93 30.29 0.09 5.24 16 6 H 0.04 1.56 7.15 -2.39 -0.02 1.54 16 7 O -0.57 -24.26 11.27 -148.98 -1.68 -25.94 16 8 C 0.06 3.06 1.60 -11.92 -0.02 3.04 16 9 H 0.00 -0.27 7.37 -2.39 -0.02 -0.29 16 10 C -0.51 -30.43 7.83 25.60 0.20 -30.23 16 11 H 0.06 3.36 6.55 -2.91 -0.02 3.35 16 12 C 0.00 0.21 5.25 84.65 0.44 0.66 16 13 N -0.92 -57.10 11.88 21.45 0.25 -56.85 16 14 Si 0.95 46.96 29.54 68.60 2.03 48.99 16 15 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 16 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 18 C -0.08 -4.06 5.06 31.39 0.16 -3.90 16 19 C 0.06 2.33 5.17 87.15 0.45 2.78 16 20 H 0.07 1.76 8.12 -2.39 -0.02 1.74 16 21 H 0.06 1.66 7.89 -2.39 -0.02 1.64 16 22 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 23 H 0.05 1.19 7.24 -2.39 -0.02 1.18 16 24 H 0.09 2.08 7.79 -2.39 -0.02 2.06 16 25 H 0.09 2.38 8.12 -2.39 -0.02 2.36 16 26 H 0.05 1.81 7.59 -2.38 -0.02 1.80 16 27 H 0.37 10.93 9.07 -74.06 -0.67 10.25 16 28 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 29 H 0.04 2.32 6.91 -2.39 -0.02 2.30 16 30 H 0.03 1.38 7.98 -2.38 -0.02 1.36 16 31 H 0.04 1.39 6.51 -2.39 -0.02 1.37 16 32 H 0.06 2.10 7.43 -2.39 -0.02 2.08 16 Total: -1.00 -70.25 247.88 -0.11 -70.36 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.42 Total: 9.60 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 3.07 Total: -22.64 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -3.95 Total: -80.38 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.68 Total: -25.94 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -70.25 -0.11 -70.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258433765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.921 kcal (2) G-P(sol) polarization free energy of solvation -70.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds