Wall clock time and date at job start Mon Mar 30 2020 02:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.44273 * 111.00113 * 2 1 4 4 C 1.54063 * 111.97585 * 219.31305 * 3 2 1 5 5 C 1.54294 * 112.28617 * 318.91687 * 4 3 2 6 6 H 1.08995 * 108.77192 * 79.21842 * 5 4 3 7 7 O 1.42903 * 108.76960 * 197.38366 * 5 4 3 8 8 C 1.50464 * 113.03629 * 318.29723 * 5 4 3 9 9 H 1.09002 * 109.57406 * 332.34148 * 8 5 4 10 10 C 1.50707 * 109.67520 * 212.02633 * 8 5 4 11 11 H 1.08000 * 120.00282 * 0.31396 * 10 8 5 12 12 C 1.37881 * 119.99500 * 180.31553 * 10 8 5 13 13 N 1.31514 * 120.00429 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99673 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46922 * 60.00103 * 14 12 10 16 16 H 1.48497 * 109.47158 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46989 * 300.00417 * 14 12 10 18 18 C 1.54511 * 108.85821 * 92.15425 * 8 5 4 19 19 C 1.45862 * 111.58445 * 282.82473 * 18 8 5 20 20 H 1.09004 * 109.46774 * 298.03202 * 1 2 3 21 21 H 1.09004 * 109.46771 * 58.02532 * 1 2 3 22 22 H 1.08995 * 109.47394 * 178.02406 * 1 2 3 23 23 H 1.08999 * 108.97954 * 339.95307 * 3 2 1 24 24 H 1.09001 * 108.98262 * 98.66860 * 3 2 1 25 25 H 1.08996 * 108.91948 * 79.63693 * 4 3 2 26 26 H 1.09004 * 108.92004 * 198.28440 * 4 3 2 27 27 H 0.96702 * 113.99668 * 303.50376 * 7 5 4 28 28 H 0.96994 * 120.00086 * 179.97438 * 13 12 10 29 29 H 1.09002 * 109.05784 * 43.36545 * 18 8 5 30 30 H 1.08998 * 109.05958 * 162.35396 * 18 8 5 31 31 H 1.08997 * 108.79514 * 182.20773 * 19 18 8 32 32 H 1.09005 * 108.79342 * 300.54612 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9861 1.3469 0.0000 4 6 3.2246 1.4890 -0.9052 5 6 4.1832 0.2866 -0.7782 6 1 3.7892 -0.5400 -1.3694 7 8 5.4587 0.6577 -1.3050 8 6 4.3623 -0.1762 0.6423 9 1 4.2056 0.6616 1.3218 10 6 5.7549 -0.7221 0.8263 11 1 6.4464 -0.7287 -0.0032 12 6 6.1460 -1.2132 2.0539 13 7 5.3038 -1.2057 3.0640 14 14 7.8720 -1.8905 2.2819 15 1 8.8644 -0.8254 1.9887 16 1 8.0414 -2.3521 3.6831 17 1 8.0823 -3.0317 1.3553 18 6 3.3281 -1.2848 0.9404 19 6 1.9986 -0.7307 1.1705 20 1 -0.3633 0.4830 0.9072 21 1 -0.3633 0.5442 -0.8718 22 1 -0.3634 -1.0270 -0.0354 23 1 1.2092 2.0249 -0.3533 24 1 2.2582 1.6222 1.0190 25 1 2.8973 1.5720 -1.9415 26 1 3.7609 2.3973 -0.6304 27 1 5.4307 0.9689 -2.2202 28 1 5.5790 -1.5515 3.9274 29 1 3.2865 -1.9698 0.0936 30 1 3.6417 -1.8348 1.8277 31 1 1.3162 -1.5448 1.4144 32 1 2.0452 -0.0465 2.0179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258433766.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:26 Heat of formation + Delta-G solvation = -45.604330 kcal Electronic energy + Delta-G solvation = -13722.253996 eV Core-core repulsion = 11489.782475 eV Total energy + Delta-G solvation = -2232.471521 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.68486 -35.90831 -33.52387 -31.13783 -30.89934 -27.42889 -25.14030 -23.31276 -22.72050 -19.72671 -18.73861 -16.73214 -15.62796 -15.13980 -14.65971 -14.41848 -14.09577 -13.54988 -12.86604 -12.51239 -12.34568 -12.03685 -11.37159 -11.22773 -10.95349 -10.88666 -10.64085 -10.52403 -10.08325 -9.85350 -9.54260 -9.07647 -8.93489 -8.51208 -8.15507 -7.75922 -5.84093 -3.84558 3.43276 3.46142 3.51103 4.48654 4.58943 5.27566 5.35786 5.50259 5.54545 5.62303 5.86076 5.91273 6.05311 6.07092 6.20247 6.24556 6.34968 6.45820 6.69824 6.87239 7.08731 7.27694 7.41607 7.56188 7.70158 7.91450 8.07103 8.23894 8.55627 8.83865 9.23886 9.78720 11.23127 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044472 B = 0.012180 C = 0.010166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.453670 B = 2298.207825 C = 2753.661683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.540 5.540 3 C 0.063 3.937 4 C -0.140 4.140 5 C 0.124 3.876 6 H 0.039 0.961 7 O -0.550 6.550 8 C 0.059 3.941 9 H 0.025 0.975 10 C -0.484 4.484 11 H 0.070 0.930 12 C 0.051 3.949 13 N -0.901 5.901 14 Si 0.891 3.109 15 H -0.279 1.279 16 H -0.291 1.291 17 H -0.279 1.279 18 C -0.114 4.114 19 C 0.067 3.933 20 H 0.018 0.982 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.343 0.657 28 H 0.257 0.743 29 H 0.036 0.964 30 H 0.102 0.898 31 H 0.047 0.953 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 2.982 -5.436 9.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.264 5.264 3 C -0.066 4.066 4 C -0.179 4.179 5 C 0.066 3.934 6 H 0.057 0.943 7 O -0.352 6.352 8 C 0.040 3.960 9 H 0.043 0.957 10 C -0.523 4.523 11 H 0.088 0.912 12 C -0.147 4.147 13 N -0.542 5.542 14 Si 0.720 3.280 15 H -0.205 1.205 16 H -0.217 1.217 17 H -0.205 1.205 18 C -0.153 4.153 19 C -0.060 4.060 20 H 0.037 0.963 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.186 0.814 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.178 2.501 -5.058 9.130 hybrid contribution 0.301 0.268 0.383 0.555 sum -6.877 2.769 -4.675 8.765 Atomic orbital electron populations 1.22410 0.88561 1.01493 0.99536 1.61742 1.06264 1.14688 1.43724 1.21766 0.96112 0.89373 0.99354 1.22700 0.96453 1.00212 0.98512 1.21768 0.80760 0.92706 0.98216 0.94309 1.86938 1.31311 1.87294 1.29631 1.18437 0.94964 0.93999 0.88568 0.95679 1.21188 0.97365 1.37701 0.96008 0.91236 1.24992 0.97032 0.96551 0.96156 1.69880 1.34714 1.48115 1.01536 0.86671 0.85445 0.79310 0.76577 1.20490 1.21670 1.20481 1.20643 0.91775 0.99910 1.02934 1.21193 0.98351 0.96869 0.89544 0.96322 0.92177 0.91811 0.93052 0.93823 0.93370 0.92012 0.81435 0.93340 0.94537 0.88011 0.93403 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.19 60.07 0.55 0.95 16 2 N -0.54 -9.65 4.48 -247.88 -1.11 -10.77 16 3 C 0.06 1.10 5.17 -4.67 -0.02 1.08 16 4 C -0.14 -2.54 5.71 -25.50 -0.15 -2.68 16 5 C 0.12 2.72 2.87 -27.32 -0.08 2.64 16 6 H 0.04 0.87 7.38 -51.93 -0.38 0.48 16 7 O -0.55 -12.09 11.19 -35.23 -0.39 -12.48 16 8 C 0.06 1.51 1.71 -92.24 -0.16 1.35 16 9 H 0.03 0.71 7.15 -51.93 -0.37 0.34 16 10 C -0.48 -13.92 8.09 -34.44 -0.28 -14.20 16 11 H 0.07 2.05 6.47 -52.49 -0.34 1.71 16 12 C 0.05 1.47 5.21 -17.82 -0.09 1.38 16 13 N -0.90 -26.25 11.38 55.43 0.63 -25.62 16 14 Si 0.89 22.29 29.54 -169.99 -5.02 17.26 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.11 -2.73 4.76 -29.32 -0.14 -2.87 16 19 C 0.07 1.35 4.96 -6.71 -0.03 1.32 16 20 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 21 H 0.06 0.75 8.01 -51.93 -0.42 0.33 16 22 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 23 H 0.05 0.76 7.49 -51.93 -0.39 0.37 16 24 H 0.04 0.83 6.51 -51.93 -0.34 0.49 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.34 5.60 9.04 45.56 0.41 6.01 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.04 0.86 7.59 -51.93 -0.39 0.47 16 30 H 0.10 2.72 5.85 -51.93 -0.30 2.42 16 31 H 0.05 0.89 7.74 -51.93 -0.40 0.48 16 32 H 0.03 0.71 7.23 -51.93 -0.38 0.33 16 LS Contribution 246.84 15.07 3.72 3.72 Total: -1.00 -30.50 246.84 -6.70 -37.19 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.12 Total: 1.72 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -0.40 Total: -11.04 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.48 Total: -36.38 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.39 Total: -12.48 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.50 -6.70 -37.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258433766.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.410 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds