Wall clock time and date at job start Mon Mar 30 2020 02:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.44273 * 111.00113 * 2 1 4 4 C 1.54063 * 111.97585 * 219.31305 * 3 2 1 5 5 C 1.54294 * 112.28617 * 318.91687 * 4 3 2 6 6 H 1.08995 * 108.77192 * 79.21842 * 5 4 3 7 7 O 1.42903 * 108.76960 * 197.38366 * 5 4 3 8 8 C 1.50464 * 113.03629 * 318.29723 * 5 4 3 9 9 H 1.09002 * 109.57406 * 332.34148 * 8 5 4 10 10 C 1.50707 * 109.67520 * 212.02633 * 8 5 4 11 11 H 1.08000 * 120.00282 * 0.31396 * 10 8 5 12 12 C 1.37881 * 119.99500 * 180.31553 * 10 8 5 13 13 N 1.31514 * 120.00429 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99673 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46922 * 60.00103 * 14 12 10 16 16 H 1.48497 * 109.47158 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46989 * 300.00417 * 14 12 10 18 18 C 1.54511 * 108.85821 * 92.15425 * 8 5 4 19 19 C 1.45862 * 111.58445 * 282.82473 * 18 8 5 20 20 H 1.09004 * 109.46774 * 298.03202 * 1 2 3 21 21 H 1.09004 * 109.46771 * 58.02532 * 1 2 3 22 22 H 1.08995 * 109.47394 * 178.02406 * 1 2 3 23 23 H 1.08999 * 108.97954 * 339.95307 * 3 2 1 24 24 H 1.09001 * 108.98262 * 98.66860 * 3 2 1 25 25 H 1.08996 * 108.91948 * 79.63693 * 4 3 2 26 26 H 1.09004 * 108.92004 * 198.28440 * 4 3 2 27 27 H 0.96702 * 113.99668 * 303.50376 * 7 5 4 28 28 H 0.96994 * 120.00086 * 179.97438 * 13 12 10 29 29 H 1.09002 * 109.05784 * 43.36545 * 18 8 5 30 30 H 1.08998 * 109.05958 * 162.35396 * 18 8 5 31 31 H 1.08997 * 108.79514 * 182.20773 * 19 18 8 32 32 H 1.09005 * 108.79342 * 300.54612 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9861 1.3469 0.0000 4 6 3.2246 1.4890 -0.9052 5 6 4.1832 0.2866 -0.7782 6 1 3.7892 -0.5400 -1.3694 7 8 5.4587 0.6577 -1.3050 8 6 4.3623 -0.1762 0.6423 9 1 4.2056 0.6616 1.3218 10 6 5.7549 -0.7221 0.8263 11 1 6.4464 -0.7287 -0.0032 12 6 6.1460 -1.2132 2.0539 13 7 5.3038 -1.2057 3.0640 14 14 7.8720 -1.8905 2.2819 15 1 8.8644 -0.8254 1.9887 16 1 8.0414 -2.3521 3.6831 17 1 8.0823 -3.0317 1.3553 18 6 3.3281 -1.2848 0.9404 19 6 1.9986 -0.7307 1.1705 20 1 -0.3633 0.4830 0.9072 21 1 -0.3633 0.5442 -0.8718 22 1 -0.3634 -1.0270 -0.0354 23 1 1.2092 2.0249 -0.3533 24 1 2.2582 1.6222 1.0190 25 1 2.8973 1.5720 -1.9415 26 1 3.7609 2.3973 -0.6304 27 1 5.4307 0.9689 -2.2202 28 1 5.5790 -1.5515 3.9274 29 1 3.2865 -1.9698 0.0936 30 1 3.6417 -1.8348 1.8277 31 1 1.3162 -1.5448 1.4144 32 1 2.0452 -0.0465 2.0179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258433766.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:25 Heat of formation + Delta-G solvation = -68.684362 kcal Electronic energy + Delta-G solvation = -13723.254822 eV Core-core repulsion = 11489.782475 eV Total energy + Delta-G solvation = -2233.472346 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.28812 -37.51851 -35.48450 -33.03370 -32.47968 -29.15198 -26.80285 -24.87568 -24.51309 -21.39573 -20.47458 -18.68233 -17.48168 -16.88907 -16.31188 -16.06231 -15.68041 -15.14459 -14.48091 -14.21309 -13.91980 -13.55567 -13.08175 -12.95065 -12.76786 -12.55721 -12.38419 -12.29016 -11.87005 -11.64059 -11.35600 -10.93399 -10.82804 -10.39122 -10.28447 -9.18544 -8.02350 -6.10342 1.41537 1.43565 1.51273 2.48656 3.09511 3.23499 3.79180 4.00694 4.18658 4.28522 4.45620 4.50217 4.57533 4.63765 4.75428 4.85738 4.99461 5.02708 5.05006 5.11148 5.36073 5.44654 5.54700 5.70953 5.97103 6.10908 6.23598 6.36877 6.51765 6.98807 7.28573 7.59734 9.02931 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044472 B = 0.012180 C = 0.010166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.453670 B = 2298.207825 C = 2753.661683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.062 3.938 4 C -0.132 4.132 5 C 0.127 3.873 6 H 0.035 0.965 7 O -0.574 6.574 8 C 0.057 3.943 9 H -0.009 1.009 10 C -0.508 4.508 11 H 0.057 0.943 12 C 0.005 3.995 13 N -0.922 5.922 14 Si 0.950 3.050 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.273 1.273 18 C -0.102 4.102 19 C 0.075 3.925 20 H 0.025 0.975 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.019 0.981 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.369 0.631 28 H 0.258 0.742 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 3.305 -6.627 11.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.067 4.067 4 C -0.171 4.171 5 C 0.068 3.932 6 H 0.053 0.947 7 O -0.380 6.380 8 C 0.038 3.962 9 H 0.009 0.991 10 C -0.547 4.547 11 H 0.075 0.925 12 C -0.192 4.192 13 N -0.563 5.563 14 Si 0.777 3.223 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.198 1.198 18 C -0.141 4.141 19 C -0.052 4.052 20 H 0.044 0.956 21 H 0.103 0.897 22 H 0.091 0.909 23 H 0.106 0.894 24 H 0.037 0.963 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.215 0.785 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -8.116 2.833 -6.273 10.641 hybrid contribution 0.587 0.183 0.719 0.946 sum -7.529 3.015 -5.554 9.830 Atomic orbital electron populations 1.22531 0.85747 1.02757 1.01031 1.61652 1.08783 1.14646 1.41939 1.21801 0.96898 0.89927 0.98056 1.22604 0.95822 0.98024 1.00627 1.21567 0.81618 0.94425 0.95575 0.94749 1.86847 1.31670 1.87562 1.31901 1.18380 0.94117 0.93166 0.90516 0.99125 1.21484 0.98901 1.38344 0.95927 0.92469 1.25714 1.00642 0.96854 0.95962 1.70012 1.36164 1.48436 1.01731 0.85733 0.81043 0.78709 0.76822 1.20372 1.20889 1.19790 1.20413 0.93506 0.99122 1.01025 1.20927 0.96894 0.97277 0.90091 0.95606 0.89676 0.90890 0.89414 0.96282 0.90173 0.92147 0.78495 0.93344 0.94878 0.91401 0.91631 0.96744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.19 127.69 1.17 1.84 16 2 N -0.55 -18.34 4.48 -938.14 -4.21 -22.55 16 3 C 0.06 2.04 5.17 87.15 0.45 2.49 16 4 C -0.13 -4.52 5.71 31.39 0.18 -4.34 16 5 C 0.13 5.49 2.87 30.21 0.09 5.58 16 6 H 0.03 1.51 7.38 -2.39 -0.02 1.49 16 7 O -0.57 -24.94 11.19 -148.98 -1.67 -26.60 16 8 C 0.06 2.98 1.71 -11.84 -0.02 2.96 16 9 H -0.01 -0.55 7.15 -2.39 -0.02 -0.56 16 10 C -0.51 -29.89 8.09 25.60 0.21 -29.69 16 11 H 0.06 3.44 6.47 -2.91 -0.02 3.42 16 12 C 0.01 0.29 5.21 84.66 0.44 0.73 16 13 N -0.92 -55.01 11.38 21.45 0.24 -54.76 16 14 Si 0.95 46.23 29.54 68.60 2.03 48.26 16 15 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 18 C -0.10 -4.98 4.76 28.92 0.14 -4.84 16 19 C 0.08 3.02 4.96 83.94 0.42 3.44 16 20 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 21 H 0.08 1.72 8.01 -2.38 -0.02 1.70 16 22 H 0.07 1.68 8.05 -2.39 -0.02 1.66 16 23 H 0.09 2.25 7.49 -2.39 -0.02 2.23 16 24 H 0.02 0.72 6.51 -2.39 -0.02 0.70 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.37 11.44 9.04 -74.06 -0.67 10.77 16 28 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.03 1.58 7.59 -2.39 -0.02 1.56 16 30 H 0.07 3.76 5.85 -2.39 -0.01 3.74 16 31 H 0.07 2.37 7.74 -2.39 -0.02 2.35 16 32 H 0.01 0.63 7.23 -2.38 -0.02 0.61 16 Total: -1.00 -66.47 246.84 -0.10 -66.57 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.43 Total: 10.93 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 3.07 Total: -21.83 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -3.96 Total: -77.32 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -1.67 Total: -26.60 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -66.47 -0.10 -66.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258433766.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.117 kcal (2) G-P(sol) polarization free energy of solvation -66.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds