Wall clock time and date at job start Mon Mar 30 2020 02:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 O 1.42907 * 109.46675 * 294.99903 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 N 1.30921 * 127.48193 * 254.70996 * 13 10 9 15 15 C 1.31164 * 117.01702 * 179.78100 * 14 13 10 16 16 N 1.30248 * 117.80151 * 0.54137 * 15 14 13 17 17 S 1.69962 * 105.62223 * 359.71498 * 16 15 14 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 0.96700 * 114.00238 * 299.99679 * 12 10 9 22 22 H 1.08001 * 121.09977 * 180.23266 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 8 2.9875 -3.6487 -1.2315 13 6 1.4957 -4.9642 0.1075 14 7 1.4028 -5.7374 1.1599 15 6 0.6882 -6.8302 1.0352 16 7 0.1377 -7.0674 -0.1212 17 16 0.5811 -5.7622 -1.1155 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.4415 -3.7366 -2.0247 22 1 0.5644 -7.5133 1.8625 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259548627.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:38 Heat of formation + Delta-G solvation = -4.661701 kcal Electronic energy + Delta-G solvation = -10459.250923 eV Core-core repulsion = 8334.215579 eV Total energy + Delta-G solvation = -2125.035344 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.036 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.90937 -37.04102 -33.05245 -32.24717 -29.78253 -26.58251 -24.05416 -21.59755 -20.33784 -18.59848 -16.92396 -15.92238 -15.22085 -14.91927 -14.49240 -14.39899 -13.63378 -12.41792 -11.94315 -11.66569 -11.38571 -11.06040 -10.85528 -10.71133 -10.35108 -10.18776 -9.59514 -9.36000 -9.32140 -8.94307 -8.51635 -6.13509 -4.16686 0.59197 1.39864 1.86405 2.78526 3.27036 3.34973 3.40157 3.99044 4.38596 4.95937 5.08341 5.24671 5.59763 5.90836 6.05710 6.23712 7.26996 7.31516 7.71384 7.82775 8.02978 8.17308 8.88986 9.48177 10.97821 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.069072 B = 0.008717 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.278614 B = 3211.451037 C = 3282.288930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.003 3.997 10 C 0.182 3.818 11 H 0.127 0.873 12 O -0.540 6.540 13 C 0.092 3.908 14 N -0.520 5.520 15 C 0.240 3.760 16 N -0.490 5.490 17 S 0.220 5.780 18 H 0.262 0.738 19 H 0.033 0.967 20 H 0.028 0.972 21 H 0.370 0.630 22 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 -8.880 -1.146 9.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.085 0.915 9 C -0.035 4.035 10 C 0.119 3.881 11 H 0.145 0.855 12 O -0.343 6.343 13 C -0.195 4.195 14 N -0.243 5.243 15 C -0.071 4.071 16 N -0.320 5.320 17 S 0.359 5.641 18 H 0.072 0.928 19 H 0.051 0.949 20 H 0.046 0.954 21 H 0.217 0.783 22 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.223 -9.346 -1.598 9.560 hybrid contribution 0.087 0.857 0.687 1.102 sum 1.310 -8.489 -0.911 8.638 Atomic orbital electron populations 1.69971 1.06138 1.26937 1.50261 1.25017 0.94889 0.99521 0.94974 0.86414 0.80183 0.83134 0.77593 1.19473 1.20942 1.20992 1.21054 0.93489 0.89577 1.51231 0.91526 1.19849 0.93698 0.91074 0.98913 1.21065 0.94164 0.84350 0.88555 0.85532 1.86636 1.36900 1.95771 1.14957 1.30989 0.96431 1.00504 0.91575 1.67384 1.21891 1.05172 1.29807 1.25275 0.91844 0.94050 0.95952 1.77565 1.27686 1.19991 1.06777 1.84820 1.42728 1.13186 1.23356 0.92804 0.94869 0.95412 0.78346 0.76801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.92 14 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 14 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 14 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 14 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 14 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 14 7 C -0.52 -13.70 8.88 -34.44 -0.31 -14.01 14 8 H 0.07 1.75 7.74 -52.49 -0.41 1.35 14 9 C 0.00 0.08 4.64 -27.88 -0.13 -0.05 14 10 C 0.18 3.58 3.46 -27.89 -0.10 3.48 14 11 H 0.13 2.53 8.14 -51.93 -0.42 2.10 14 12 O -0.54 -10.03 13.07 -35.23 -0.46 -10.49 14 13 C 0.09 1.66 6.71 -12.67 -0.09 1.57 14 14 N -0.52 -9.15 10.61 -15.36 -0.16 -9.31 14 15 C 0.24 3.63 12.33 -94.00 -1.16 2.47 14 16 N -0.49 -7.92 12.22 26.10 0.32 -7.60 14 17 S 0.22 3.52 23.43 -107.50 -2.52 1.00 14 18 H 0.26 7.12 8.31 -40.82 -0.34 6.78 14 19 H 0.03 0.86 8.14 -51.93 -0.42 0.43 14 20 H 0.03 0.68 8.14 -51.93 -0.42 0.25 14 21 H 0.37 5.70 8.69 45.56 0.40 6.10 14 22 H 0.22 2.31 8.06 -52.49 -0.42 1.88 14 LS Contribution 222.18 15.07 3.35 3.35 Total: -1.00 -29.83 222.18 -6.47 -36.30 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -0.84 Total: 0.79 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.87 Total: -5.05 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.89 Total: -41.83 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.46 Total: -10.49 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.52 Total: 1.00 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.83 -6.47 -36.30 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259548627.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.642 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds