Wall clock time and date at job start Mon Mar 30 2020 02:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.39777 * 110.99949 * 2 1 4 4 C 1.54430 * 111.77191 * 189.12821 * 3 2 1 5 5 C 1.50754 * 109.02618 * 282.58913 * 4 3 2 6 6 C 1.54171 * 112.60852 * 93.01675 * 5 4 3 7 7 H 1.09007 * 108.97887 * 79.04595 * 6 5 4 8 8 O 1.42900 * 108.98083 * 197.84666 * 6 5 4 9 9 C 1.53821 * 111.96915 * 318.48691 * 6 5 4 10 10 H 1.09011 * 109.04778 * 79.59608 * 9 6 5 11 11 C 1.50695 * 109.05068 * 198.48907 * 9 6 5 12 12 H 1.08004 * 120.00023 * 84.87408 * 11 9 6 13 13 C 1.37882 * 120.00459 * 264.87976 * 11 9 6 14 14 N 1.31520 * 119.99622 * 6.15006 * 13 11 9 15 15 Si 1.86794 * 120.00321 * 186.15886 * 13 11 9 16 16 H 1.48495 * 109.47374 * 84.96909 * 15 13 11 17 17 H 1.48498 * 109.47032 * 204.97419 * 15 13 11 18 18 H 1.48510 * 109.46843 * 324.97096 * 15 13 11 19 19 C 1.47630 * 111.00487 * 128.88979 * 2 1 3 20 20 H 1.08996 * 109.47324 * 56.66054 * 1 2 3 21 21 H 1.08994 * 109.46637 * 176.66101 * 1 2 3 22 22 H 1.08994 * 109.46869 * 296.66097 * 1 2 3 23 23 H 1.09006 * 109.02283 * 309.71680 * 3 2 1 24 24 H 1.09001 * 109.02055 * 68.61455 * 3 2 1 25 25 H 1.08996 * 109.54321 * 42.45676 * 4 3 2 26 26 H 1.09000 * 109.54363 * 162.63409 * 4 3 2 27 27 H 1.08996 * 108.85317 * 213.82174 * 5 4 3 28 28 H 1.08999 * 108.85655 * 332.31499 * 5 4 3 29 29 H 0.96698 * 114.00268 * 300.00312 * 8 6 5 30 30 H 0.96998 * 119.99841 * 179.97438 * 14 13 11 31 31 H 1.08996 * 109.74490 * 269.99281 * 19 2 1 32 32 H 1.09006 * 109.74310 * 30.70681 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9699 1.3049 0.0000 4 6 3.4971 1.3323 -0.2275 5 6 4.1920 0.9518 1.0551 6 6 4.4983 -0.5569 1.1382 7 1 5.3850 -0.7720 0.5417 8 8 4.7591 -0.9039 2.4997 9 6 3.3290 -1.4110 0.6194 10 1 3.3551 -1.4254 -0.4703 11 6 3.4834 -2.8196 1.1319 12 1 3.1121 -3.0816 2.1117 13 6 4.0990 -3.7742 0.3502 14 7 4.6583 -3.4301 -0.7893 15 14 4.1383 -5.5560 0.9094 16 1 2.8822 -6.2322 0.4969 17 1 5.2982 -6.2443 0.2881 18 1 4.2659 -5.6080 2.3881 19 6 1.9982 -0.8653 1.0727 20 1 -0.3634 0.5648 -0.8585 21 1 -0.3632 -1.0259 -0.0599 22 1 -0.3633 0.4611 0.9184 23 1 1.4825 1.8726 -0.7927 24 1 1.7464 1.7712 0.9595 25 1 3.7619 0.6216 -1.0104 26 1 3.8034 2.3348 -0.5263 27 1 5.1280 1.5058 1.1263 28 1 3.5553 1.2273 1.8958 29 1 5.5094 -0.4340 2.8886 30 1 5.0916 -4.1015 -1.3391 31 1 2.1303 -0.2826 1.9843 32 1 1.3067 -1.6874 1.2575 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259556146.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:24 Heat of formation + Delta-G solvation = -48.155278 kcal Electronic energy + Delta-G solvation = -13748.487264 eV Core-core repulsion = 11515.905126 eV Total energy + Delta-G solvation = -2232.582138 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.79563 -35.78819 -32.97353 -32.43995 -30.30024 -26.87164 -25.29926 -23.70912 -22.47003 -20.07218 -18.46495 -16.65897 -15.87071 -15.04730 -14.89070 -14.23464 -14.18969 -13.42665 -12.70356 -12.53717 -12.33432 -11.86356 -11.59909 -11.47158 -11.07130 -10.82074 -10.57727 -10.51127 -10.30306 -10.06643 -9.57127 -9.12911 -8.77236 -8.61181 -8.24314 -7.44825 -5.89165 -3.86745 3.39971 3.45459 3.50197 4.52921 4.71475 5.33874 5.37201 5.44058 5.56421 5.75098 5.82743 5.91995 6.02800 6.16562 6.19872 6.27361 6.45448 6.48932 6.52862 6.66554 6.79201 6.95032 7.21244 7.54470 7.79131 7.99801 8.08451 8.26212 8.50526 8.89583 9.20466 9.74376 11.21659 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.037259 B = 0.012895 C = 0.011135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.318900 B = 2170.930540 C = 2514.079580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.562 5.562 3 C 0.084 3.916 4 C -0.113 4.113 5 C -0.154 4.154 6 C 0.114 3.886 7 H 0.042 0.958 8 O -0.550 6.550 9 C 0.045 3.955 10 H 0.081 0.919 11 C -0.485 4.485 12 H 0.053 0.947 13 C 0.060 3.940 14 N -0.899 5.899 15 Si 0.890 3.110 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.275 1.275 19 C 0.081 3.919 20 H 0.056 0.944 21 H 0.066 0.934 22 H 0.013 0.987 23 H 0.057 0.943 24 H 0.006 0.994 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.344 0.656 30 H 0.258 0.742 31 H 0.022 0.978 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 8.207 1.529 8.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.286 5.286 3 C -0.046 4.046 4 C -0.151 4.151 5 C -0.192 4.192 6 C 0.055 3.945 7 H 0.060 0.940 8 O -0.351 6.351 9 C 0.026 3.974 10 H 0.099 0.901 11 C -0.524 4.524 12 H 0.071 0.929 13 C -0.141 4.141 14 N -0.538 5.538 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.201 1.201 19 C -0.044 4.044 20 H 0.074 0.926 21 H 0.085 0.915 22 H 0.032 0.968 23 H 0.076 0.924 24 H 0.024 0.976 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.186 0.814 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.463 7.541 0.873 8.344 hybrid contribution 0.405 -0.143 1.064 1.147 sum -3.058 7.399 1.937 8.237 Atomic orbital electron populations 1.22274 0.88301 1.01768 0.98954 1.58902 1.06181 1.12909 1.50584 1.20846 0.95751 0.89726 0.98259 1.21361 0.94255 1.00648 0.98847 1.22284 0.99378 0.99610 0.97952 1.22612 1.00479 0.89549 0.81846 0.93986 1.86782 1.52326 1.68148 1.27847 1.18753 0.86527 0.92896 0.99196 0.90068 1.20935 1.36757 0.93190 1.01486 0.92860 1.24951 0.95332 0.98697 0.95090 1.69938 1.37344 1.33515 1.13002 0.86647 0.77283 0.85437 0.78803 1.20788 1.21563 1.20055 1.22161 0.99139 0.93812 0.89324 0.92556 0.91548 0.96844 0.92429 0.97585 0.90012 0.92582 0.93870 0.92714 0.81395 0.93201 0.95928 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.44 60.07 0.57 1.13 16 2 N -0.56 -10.98 4.19 -248.33 -1.04 -12.02 16 3 C 0.08 1.45 4.93 -6.75 -0.03 1.42 16 4 C -0.11 -1.98 5.65 -27.11 -0.15 -2.13 16 5 C -0.15 -2.85 4.93 -27.24 -0.13 -2.99 16 6 C 0.11 2.61 3.14 -25.69 -0.08 2.53 16 7 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 8 O -0.55 -12.43 12.31 -35.23 -0.43 -12.86 16 9 C 0.05 1.15 1.65 -92.45 -0.15 0.99 16 10 H 0.08 2.29 6.45 -51.92 -0.34 1.96 16 11 C -0.48 -13.74 7.10 -34.44 -0.24 -13.99 16 12 H 0.05 1.54 7.82 -52.48 -0.41 1.13 16 13 C 0.06 1.71 5.45 -17.82 -0.10 1.61 16 14 N -0.90 -26.61 12.82 55.43 0.71 -25.89 16 15 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.08 1.81 4.88 -4.52 -0.02 1.79 16 20 H 0.06 0.79 7.98 -51.93 -0.41 0.38 16 21 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 23 H 0.06 0.88 7.89 -51.93 -0.41 0.47 16 24 H 0.01 0.11 7.54 -51.93 -0.39 -0.28 16 25 H 0.08 1.62 7.11 -51.93 -0.37 1.26 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 1.02 6.56 -51.93 -0.34 0.68 16 29 H 0.34 5.98 9.08 45.56 0.41 6.39 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.02 0.50 6.66 -51.93 -0.35 0.16 16 32 H 0.07 1.55 7.26 -51.93 -0.38 1.17 16 LS Contribution 250.50 15.07 3.78 3.78 Total: -1.00 -30.59 250.50 -6.58 -37.16 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.22 Total: 2.34 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.35 Total: -9.63 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.33 Total: -37.91 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.43 Total: -12.86 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.59 -6.58 -37.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556146.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.991 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds