Wall clock time and date at job start Mon Mar 30 2020 02:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.39777 * 110.99949 * 2 1 4 4 C 1.54430 * 111.77191 * 189.12821 * 3 2 1 5 5 C 1.50754 * 109.02618 * 282.58913 * 4 3 2 6 6 C 1.54171 * 112.60852 * 93.01675 * 5 4 3 7 7 H 1.09007 * 108.97887 * 79.04595 * 6 5 4 8 8 O 1.42900 * 108.98083 * 197.84666 * 6 5 4 9 9 C 1.53821 * 111.96915 * 318.48691 * 6 5 4 10 10 H 1.09011 * 109.04778 * 79.59608 * 9 6 5 11 11 C 1.50695 * 109.05068 * 198.48907 * 9 6 5 12 12 H 1.08004 * 120.00023 * 84.87408 * 11 9 6 13 13 C 1.37882 * 120.00459 * 264.87976 * 11 9 6 14 14 N 1.31520 * 119.99622 * 6.15006 * 13 11 9 15 15 Si 1.86794 * 120.00321 * 186.15886 * 13 11 9 16 16 H 1.48495 * 109.47374 * 84.96909 * 15 13 11 17 17 H 1.48498 * 109.47032 * 204.97419 * 15 13 11 18 18 H 1.48510 * 109.46843 * 324.97096 * 15 13 11 19 19 C 1.47630 * 111.00487 * 128.88979 * 2 1 3 20 20 H 1.08996 * 109.47324 * 56.66054 * 1 2 3 21 21 H 1.08994 * 109.46637 * 176.66101 * 1 2 3 22 22 H 1.08994 * 109.46869 * 296.66097 * 1 2 3 23 23 H 1.09006 * 109.02283 * 309.71680 * 3 2 1 24 24 H 1.09001 * 109.02055 * 68.61455 * 3 2 1 25 25 H 1.08996 * 109.54321 * 42.45676 * 4 3 2 26 26 H 1.09000 * 109.54363 * 162.63409 * 4 3 2 27 27 H 1.08996 * 108.85317 * 213.82174 * 5 4 3 28 28 H 1.08999 * 108.85655 * 332.31499 * 5 4 3 29 29 H 0.96698 * 114.00268 * 300.00312 * 8 6 5 30 30 H 0.96998 * 119.99841 * 179.97438 * 14 13 11 31 31 H 1.08996 * 109.74490 * 269.99281 * 19 2 1 32 32 H 1.09006 * 109.74310 * 30.70681 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9699 1.3049 0.0000 4 6 3.4971 1.3323 -0.2275 5 6 4.1920 0.9518 1.0551 6 6 4.4983 -0.5569 1.1382 7 1 5.3850 -0.7720 0.5417 8 8 4.7591 -0.9039 2.4997 9 6 3.3290 -1.4110 0.6194 10 1 3.3551 -1.4254 -0.4703 11 6 3.4834 -2.8196 1.1319 12 1 3.1121 -3.0816 2.1117 13 6 4.0990 -3.7742 0.3502 14 7 4.6583 -3.4301 -0.7893 15 14 4.1383 -5.5560 0.9094 16 1 2.8822 -6.2322 0.4969 17 1 5.2982 -6.2443 0.2881 18 1 4.2659 -5.6080 2.3881 19 6 1.9982 -0.8653 1.0727 20 1 -0.3634 0.5648 -0.8585 21 1 -0.3632 -1.0259 -0.0599 22 1 -0.3633 0.4611 0.9184 23 1 1.4825 1.8726 -0.7927 24 1 1.7464 1.7712 0.9595 25 1 3.7619 0.6216 -1.0104 26 1 3.8034 2.3348 -0.5263 27 1 5.1280 1.5058 1.1263 28 1 3.5553 1.2273 1.8958 29 1 5.5094 -0.4340 2.8886 30 1 5.0916 -4.1015 -1.3391 31 1 2.1303 -0.2826 1.9843 32 1 1.3067 -1.6874 1.2575 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259556146.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:24 Heat of formation + Delta-G solvation = -71.280232 kcal Electronic energy + Delta-G solvation = -13749.490037 eV Core-core repulsion = 11515.905126 eV Total energy + Delta-G solvation = -2233.584912 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.39428 -37.47062 -35.04115 -33.94858 -32.22931 -28.33945 -27.20984 -25.37135 -24.19927 -21.56350 -20.28407 -18.65197 -17.66754 -16.84007 -16.46801 -16.07503 -15.74662 -15.01331 -14.29101 -14.23441 -14.01901 -13.51421 -13.25487 -13.12605 -12.79044 -12.68836 -12.40030 -12.18668 -11.94876 -11.50563 -11.38007 -11.09513 -10.81651 -10.47265 -10.26042 -8.93730 -8.07339 -6.10941 1.41186 1.41845 1.51984 2.47080 3.18691 3.28633 3.79220 3.97935 4.11476 4.25715 4.45894 4.50401 4.55213 4.67615 4.74065 4.81595 4.93379 5.04578 5.05278 5.07478 5.14588 5.42471 5.47226 5.69576 5.75541 5.99815 6.34610 6.47936 6.73453 7.01348 7.27410 7.53740 9.02836 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.037259 B = 0.012895 C = 0.011135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.318900 B = 2170.930540 C = 2514.079580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.580 5.580 3 C 0.080 3.920 4 C -0.113 4.113 5 C -0.142 4.142 6 C 0.118 3.882 7 H 0.009 0.991 8 O -0.570 6.570 9 C 0.044 3.956 10 H 0.046 0.954 11 C -0.499 4.499 12 H 0.041 0.959 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.950 3.050 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.095 3.905 20 H 0.081 0.919 21 H 0.058 0.942 22 H 0.027 0.973 23 H 0.084 0.916 24 H 0.016 0.984 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.367 0.633 30 H 0.259 0.741 31 H 0.023 0.977 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 9.457 1.971 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.305 5.305 3 C -0.049 4.049 4 C -0.151 4.151 5 C -0.179 4.179 6 C 0.059 3.941 7 H 0.028 0.972 8 O -0.374 6.374 9 C 0.025 3.975 10 H 0.064 0.936 11 C -0.538 4.538 12 H 0.059 0.941 13 C -0.189 4.189 14 N -0.570 5.570 15 Si 0.777 3.223 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.031 4.031 20 H 0.100 0.900 21 H 0.077 0.923 22 H 0.046 0.954 23 H 0.102 0.898 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.213 0.787 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.079 8.809 1.324 9.797 hybrid contribution 0.597 -0.495 0.938 1.217 sum -3.482 8.314 2.262 9.293 Atomic orbital electron populations 1.22334 0.86120 1.02012 1.00771 1.58809 1.08287 1.14034 1.49350 1.20965 0.95553 0.88689 0.99701 1.21405 0.94731 1.01778 0.97184 1.22114 1.00993 0.96043 0.98786 1.22350 0.97969 0.92384 0.81410 0.97241 1.86694 1.53787 1.69376 1.27545 1.18650 0.89309 0.92514 0.97038 0.93628 1.21230 1.36348 0.95240 1.00959 0.94112 1.25685 0.95231 1.02661 0.95305 1.70062 1.38263 1.34610 1.14035 0.85691 0.77594 0.80749 0.78312 1.19892 1.21062 1.19834 1.21781 0.97242 0.93986 0.90127 0.90044 0.92342 0.95436 0.89753 0.96604 0.93119 0.88903 0.91260 0.92175 0.78709 0.93248 0.95879 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 9.44 127.69 1.21 2.26 16 2 N -0.58 -21.93 4.19 -939.59 -3.94 -25.87 16 3 C 0.08 2.54 4.93 88.07 0.43 2.97 16 4 C -0.11 -3.71 5.65 30.35 0.17 -3.54 16 5 C -0.14 -4.96 4.93 30.26 0.15 -4.81 16 6 C 0.12 5.43 3.14 31.27 0.10 5.52 16 7 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 8 O -0.57 -25.58 12.31 -148.98 -1.83 -27.42 16 9 C 0.04 2.28 1.65 -11.98 -0.02 2.26 16 10 H 0.05 2.68 6.45 -2.38 -0.02 2.66 16 11 C -0.50 -28.94 7.10 25.60 0.18 -28.76 16 12 H 0.04 2.41 7.82 -2.91 -0.02 2.38 16 13 C 0.01 0.49 5.45 84.65 0.46 0.95 16 14 N -0.93 -56.47 12.82 21.45 0.27 -56.19 16 15 Si 0.95 46.05 29.54 68.60 2.03 48.08 16 16 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 17 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 19 C 0.10 4.24 4.88 85.45 0.42 4.66 16 20 H 0.08 2.04 7.98 -2.39 -0.02 2.02 16 21 H 0.06 1.83 7.93 -2.39 -0.02 1.81 16 22 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.08 2.24 7.89 -2.38 -0.02 2.22 16 24 H 0.02 0.49 7.54 -2.39 -0.02 0.47 16 25 H 0.05 2.00 7.11 -2.39 -0.02 1.98 16 26 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.06 2.07 6.56 -2.39 -0.02 2.05 16 29 H 0.37 12.37 9.08 -74.06 -0.67 11.70 16 30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.02 1.01 6.66 -2.39 -0.02 0.99 16 32 H 0.05 2.43 7.26 -2.38 -0.02 2.41 16 Total: -1.00 -66.64 250.50 0.05 -66.59 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.42 Total: 13.29 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 3.10 Total: -18.48 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.66 Total: -82.06 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -1.83 Total: -27.42 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -66.64 0.05 -66.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556146.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.686 kcal (2) G-P(sol) polarization free energy of solvation -66.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds