Wall clock time and date at job start Mon Mar 30 2020 02:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99795 * 2 1 4 4 H 1.08995 * 109.52291 * 29.87087 * 3 2 1 5 5 C 1.53124 * 109.57259 * 269.71411 * 3 2 1 6 6 C 1.53035 * 109.27475 * 297.71611 * 5 3 2 7 7 N 1.46846 * 109.52744 * 300.82106 * 6 5 3 8 8 C 1.46898 * 111.00056 * 185.84176 * 7 6 5 9 9 C 1.46846 * 111.19780 * 61.74478 * 7 6 5 10 10 C 1.53032 * 109.52443 * 298.25976 * 9 7 6 11 11 H 1.09000 * 109.50361 * 299.23864 * 10 9 7 12 12 C 1.50693 * 109.50664 * 179.11986 * 10 9 7 13 13 H 1.08004 * 119.99983 * 239.99478 * 12 10 9 14 14 C 1.37878 * 120.00180 * 59.99570 * 12 10 9 15 15 N 1.31511 * 119.99540 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00394 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46989 * 89.99882 * 16 14 12 18 18 H 1.48500 * 109.47625 * 210.00282 * 16 14 12 19 19 H 1.48504 * 109.47208 * 330.00366 * 16 14 12 20 20 H 1.09005 * 109.47418 * 300.00380 * 1 2 3 21 21 H 1.08997 * 109.47422 * 59.99968 * 1 2 3 22 22 H 1.09003 * 109.47293 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.50112 * 177.78005 * 5 3 2 24 24 H 1.08992 * 109.50394 * 57.65753 * 5 3 2 25 25 H 1.09008 * 109.45841 * 180.80263 * 6 5 3 26 26 H 1.09003 * 109.46290 * 60.84246 * 6 5 3 27 27 H 1.08997 * 109.47063 * 56.04360 * 8 7 6 28 28 H 1.08993 * 109.47414 * 176.04888 * 8 7 6 29 29 H 1.09004 * 109.47400 * 296.04746 * 8 7 6 30 30 H 1.09009 * 109.46169 * 58.27021 * 9 7 6 31 31 H 1.08995 * 109.46611 * 178.23876 * 9 7 6 32 32 H 0.97004 * 119.99831 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 2.0006 0.5116 5 6 2.2254 1.7712 -1.4427 6 6 3.2082 0.8260 -2.1374 7 7 4.4837 0.8228 -1.4098 8 6 5.4958 0.0341 -2.1250 9 6 4.3100 0.3342 -0.0359 10 6 3.3601 1.2646 0.7216 11 1 3.7845 2.2680 0.7565 12 6 3.1651 0.7508 2.1248 13 1 2.1772 0.4833 2.4695 14 6 4.2480 0.6223 2.9686 15 7 5.4509 0.9486 2.5489 16 14 4.0065 -0.0152 4.7077 17 1 4.1398 -1.4942 4.7156 18 1 5.0338 0.5793 5.6001 19 1 2.6536 0.3623 5.1899 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 2.6320 2.7825 -1.4418 24 1 1.2738 1.7614 -1.9741 25 1 3.3746 1.1631 -3.1606 26 1 2.7948 -0.1825 -2.1502 27 1 5.6078 0.4200 -3.1382 28 1 6.4491 0.1059 -1.6014 29 1 5.1815 -1.0088 -2.1661 30 1 3.8913 -0.6721 -0.0585 31 1 5.2766 0.3139 0.4673 32 1 6.2127 0.8585 3.1426 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259566820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:05 Heat of formation + Delta-G solvation = -46.022342 kcal Electronic energy + Delta-G solvation = -13745.943715 eV Core-core repulsion = 11513.454068 eV Total energy + Delta-G solvation = -2232.489647 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.60330 -35.94026 -33.19516 -31.35404 -29.50385 -26.18301 -25.53351 -24.72287 -21.74954 -21.21933 -18.59681 -16.36941 -15.41245 -15.05015 -14.68578 -14.20651 -13.96220 -13.88842 -13.28147 -12.46218 -12.13845 -12.01560 -11.77545 -11.25542 -10.98684 -10.90227 -10.63414 -10.46040 -10.38738 -10.04007 -9.90336 -9.26052 -8.77245 -8.52034 -8.28904 -7.31696 -5.93394 -3.97753 3.34887 3.41200 3.44463 4.48121 4.66715 4.95697 5.39776 5.60987 5.68340 5.80859 5.86413 5.92498 6.00599 6.11735 6.16824 6.26023 6.39631 6.44129 6.48165 6.66864 6.85582 7.07688 7.09193 7.66782 7.78945 7.98176 8.13895 8.17172 8.25148 8.57279 9.04520 9.65157 11.12790 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031920 B = 0.014458 C = 0.010892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.978015 B = 1936.191274 C = 2570.130773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.093 3.907 4 H 0.046 0.954 5 C -0.137 4.137 6 C 0.066 3.934 7 N -0.549 5.549 8 C 0.032 3.968 9 C 0.067 3.933 10 C 0.059 3.941 11 H 0.045 0.955 12 C -0.500 4.500 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.034 0.966 21 H 0.026 0.974 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.029 0.971 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.103 0.897 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 -0.438 -6.726 8.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C 0.036 3.964 4 H 0.064 0.936 5 C -0.175 4.175 6 C -0.062 4.062 7 N -0.273 5.273 8 C -0.117 4.117 9 C -0.060 4.060 10 C 0.040 3.960 11 H 0.063 0.937 12 C -0.539 4.539 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 H 0.053 0.947 21 H 0.045 0.955 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.121 0.879 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.425 -0.115 -6.628 7.970 hybrid contribution -0.607 -1.023 0.840 1.456 sum -5.032 -1.138 -5.788 7.754 Atomic orbital electron populations 1.22625 0.83857 1.01216 0.98748 1.88008 1.17051 1.28835 1.94698 1.22451 0.97550 0.83140 0.93298 0.93589 1.22086 0.97704 0.99959 0.97743 1.21833 0.90470 0.97955 0.95985 1.62133 1.06984 1.53896 1.04326 1.22226 0.96634 0.94829 0.98004 1.22342 1.03562 0.95874 0.84198 1.18834 0.87494 0.96809 0.92869 0.93719 1.21066 0.93874 1.42940 0.96042 0.92476 1.24973 0.95314 0.95500 0.98354 1.69878 0.98635 1.48681 1.35853 0.86599 0.77736 0.79001 0.84671 1.20809 1.21337 1.20043 0.94735 0.95537 0.90988 0.90961 0.93135 0.92817 0.95278 0.92990 0.91760 0.96842 0.96692 0.87914 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.82 101.05 1.09 1.64 16 2 O -0.37 -7.99 8.70 -35.23 -0.31 -8.30 16 3 C 0.09 2.03 2.35 -26.60 -0.06 1.97 16 4 H 0.05 0.97 7.79 -51.93 -0.40 0.57 16 5 C -0.14 -2.56 5.79 -26.65 -0.15 -2.72 16 6 C 0.07 1.26 5.33 -3.84 -0.02 1.24 16 7 N -0.55 -11.82 4.91 -242.96 -1.19 -13.01 16 8 C 0.03 0.58 9.59 60.06 0.58 1.16 16 9 C 0.07 1.68 4.38 -3.84 -0.02 1.66 16 10 C 0.06 1.51 2.10 -91.69 -0.19 1.32 16 11 H 0.04 1.25 8.14 -51.93 -0.42 0.82 16 12 C -0.50 -13.97 8.20 -34.44 -0.28 -14.25 16 13 H 0.06 1.60 7.64 -52.48 -0.40 1.20 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -25.66 11.33 55.43 0.63 -25.04 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 21 H 0.03 0.39 7.86 -51.93 -0.41 -0.02 16 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 24 H 0.05 0.82 7.86 -51.93 -0.41 0.41 16 25 H 0.05 0.90 8.09 -51.92 -0.42 0.48 16 26 H 0.03 0.58 7.76 -51.93 -0.40 0.18 16 27 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.01 0.39 7.76 -51.92 -0.40 -0.01 16 31 H 0.10 2.85 6.08 -51.93 -0.32 2.53 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 255.71 15.07 3.85 3.85 Total: -1.00 -29.36 255.71 -6.45 -35.80 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -5.25 Total: -3.50 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 0.85 Total: -6.42 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.57 Total: -38.05 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.31 Total: -8.30 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.36 -6.45 -35.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259566820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.221 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds