Wall clock time and date at job start Mon Mar 30 2020 02:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99795 * 2 1 4 4 H 1.08995 * 109.52291 * 29.87087 * 3 2 1 5 5 C 1.53124 * 109.57259 * 269.71411 * 3 2 1 6 6 C 1.53035 * 109.27475 * 297.71611 * 5 3 2 7 7 N 1.46846 * 109.52744 * 300.82106 * 6 5 3 8 8 C 1.46898 * 111.00056 * 185.84176 * 7 6 5 9 9 C 1.46846 * 111.19780 * 61.74478 * 7 6 5 10 10 C 1.53032 * 109.52443 * 298.25976 * 9 7 6 11 11 H 1.09000 * 109.50361 * 299.23864 * 10 9 7 12 12 C 1.50693 * 109.50664 * 179.11986 * 10 9 7 13 13 H 1.08004 * 119.99983 * 239.99478 * 12 10 9 14 14 C 1.37878 * 120.00180 * 59.99570 * 12 10 9 15 15 N 1.31511 * 119.99540 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00394 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46989 * 89.99882 * 16 14 12 18 18 H 1.48500 * 109.47625 * 210.00282 * 16 14 12 19 19 H 1.48504 * 109.47208 * 330.00366 * 16 14 12 20 20 H 1.09005 * 109.47418 * 300.00380 * 1 2 3 21 21 H 1.08997 * 109.47422 * 59.99968 * 1 2 3 22 22 H 1.09003 * 109.47293 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.50112 * 177.78005 * 5 3 2 24 24 H 1.08992 * 109.50394 * 57.65753 * 5 3 2 25 25 H 1.09008 * 109.45841 * 180.80263 * 6 5 3 26 26 H 1.09003 * 109.46290 * 60.84246 * 6 5 3 27 27 H 1.08997 * 109.47063 * 56.04360 * 8 7 6 28 28 H 1.08993 * 109.47414 * 176.04888 * 8 7 6 29 29 H 1.09004 * 109.47400 * 296.04746 * 8 7 6 30 30 H 1.09009 * 109.46169 * 58.27021 * 9 7 6 31 31 H 1.08995 * 109.46611 * 178.23876 * 9 7 6 32 32 H 0.97004 * 119.99831 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 2.0006 0.5116 5 6 2.2254 1.7712 -1.4427 6 6 3.2082 0.8260 -2.1374 7 7 4.4837 0.8228 -1.4098 8 6 5.4958 0.0341 -2.1250 9 6 4.3100 0.3342 -0.0359 10 6 3.3601 1.2646 0.7216 11 1 3.7845 2.2680 0.7565 12 6 3.1651 0.7508 2.1248 13 1 2.1772 0.4833 2.4695 14 6 4.2480 0.6223 2.9686 15 7 5.4509 0.9486 2.5489 16 14 4.0065 -0.0152 4.7077 17 1 4.1398 -1.4942 4.7156 18 1 5.0338 0.5793 5.6001 19 1 2.6536 0.3623 5.1899 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 2.6320 2.7825 -1.4418 24 1 1.2738 1.7614 -1.9741 25 1 3.3746 1.1631 -3.1606 26 1 2.7948 -0.1825 -2.1502 27 1 5.6078 0.4200 -3.1382 28 1 6.4491 0.1059 -1.6014 29 1 5.1815 -1.0088 -2.1661 30 1 3.8913 -0.6721 -0.0585 31 1 5.2766 0.3139 0.4673 32 1 6.2127 0.8585 3.1426 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259566820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:05 Heat of formation + Delta-G solvation = -66.450091 kcal Electronic energy + Delta-G solvation = -13746.829529 eV Core-core repulsion = 11513.454068 eV Total energy + Delta-G solvation = -2233.375461 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.28568 -37.55531 -35.22525 -33.01141 -31.37652 -27.64414 -27.27535 -26.52740 -23.49464 -22.97988 -20.32187 -18.43465 -17.08137 -16.86932 -16.28766 -15.96858 -15.61337 -15.53343 -14.88617 -14.07119 -13.91798 -13.83472 -13.25684 -12.91813 -12.68867 -12.61365 -12.49720 -12.22416 -12.04397 -11.86991 -11.70856 -11.09567 -10.69487 -10.49862 -10.09466 -9.03691 -8.06500 -6.18590 1.41303 1.42190 1.52233 2.44692 3.06252 3.25673 3.40533 4.08764 4.12243 4.34631 4.50483 4.57968 4.59927 4.65336 4.70324 4.83814 4.87026 4.90161 4.94887 5.00169 5.20072 5.20842 5.28138 5.59340 5.78254 5.98138 6.21804 6.46913 6.51350 6.66262 6.90344 7.47553 8.98327 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031920 B = 0.014458 C = 0.010892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.978015 B = 1936.191274 C = 2570.130773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.097 3.903 4 H 0.046 0.954 5 C -0.131 4.131 6 C 0.066 3.934 7 N -0.562 5.562 8 C 0.032 3.968 9 C 0.088 3.912 10 C 0.053 3.947 11 H 0.013 0.987 12 C -0.518 4.518 13 H 0.049 0.951 14 C 0.011 3.989 15 N -0.917 5.917 16 Si 0.954 3.046 17 H -0.279 1.279 18 H -0.282 1.282 19 H -0.269 1.269 20 H 0.034 0.966 21 H 0.052 0.948 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.021 0.979 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.014 0.986 30 H -0.009 1.009 31 H 0.069 0.931 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 -0.526 -7.724 9.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C 0.039 3.961 4 H 0.064 0.936 5 C -0.169 4.169 6 C -0.062 4.062 7 N -0.286 5.286 8 C -0.116 4.116 9 C -0.040 4.040 10 C 0.034 3.966 11 H 0.031 0.969 12 C -0.557 4.557 13 H 0.068 0.932 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.205 1.205 18 H -0.207 1.207 19 H -0.193 1.193 20 H 0.052 0.948 21 H 0.071 0.929 22 H 0.108 0.892 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.039 0.961 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.009 0.991 31 H 0.088 0.912 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.548 -0.200 -7.641 9.445 hybrid contribution -0.285 -1.001 1.114 1.525 sum -5.833 -1.202 -6.527 8.836 Atomic orbital electron populations 1.22860 0.81201 1.02906 0.99981 1.87946 1.19982 1.28656 1.94995 1.22233 0.95321 0.83539 0.94977 0.93568 1.22052 0.99357 0.99672 0.95792 1.21944 0.89169 0.97772 0.97313 1.62075 1.09025 1.54323 1.03214 1.22295 0.95314 0.94791 0.99249 1.21872 1.01224 0.94458 0.86449 1.18749 0.90184 0.94818 0.92878 0.96899 1.21346 0.93598 1.43130 0.97627 0.93229 1.25730 0.95062 0.95724 1.02165 1.70015 0.99229 1.49370 1.37053 0.85626 0.77949 0.78333 0.80148 1.20529 1.20709 1.19329 0.94779 0.92927 0.89165 0.90787 0.89751 0.89364 0.96104 0.89533 0.92569 0.96696 0.99114 0.91234 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.82 113.37 1.23 2.07 16 2 O -0.40 -16.85 8.70 -148.98 -1.30 -18.14 16 3 C 0.10 4.16 2.35 30.68 0.07 4.23 16 4 H 0.05 1.93 7.79 -2.39 -0.02 1.91 16 5 C -0.13 -4.58 5.79 30.65 0.18 -4.41 16 6 C 0.07 2.36 5.33 86.33 0.46 2.82 16 7 N -0.56 -23.78 4.91 -922.60 -4.53 -28.31 16 8 C 0.03 1.12 9.59 127.69 1.22 2.34 16 9 C 0.09 4.51 4.38 86.32 0.38 4.88 16 10 C 0.05 2.76 2.10 -11.49 -0.02 2.74 16 11 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 12 C -0.52 -29.58 8.20 25.60 0.21 -29.37 16 13 H 0.05 2.83 7.64 -2.91 -0.02 2.80 16 14 C 0.01 0.65 5.30 84.66 0.45 1.10 16 15 N -0.92 -54.19 11.33 21.45 0.24 -53.94 16 16 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H 0.03 1.05 8.09 -2.38 -0.02 1.03 16 21 H 0.05 1.36 7.86 -2.39 -0.02 1.34 16 22 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 23 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 24 H 0.08 2.40 7.86 -2.39 -0.02 2.38 16 25 H 0.09 2.58 8.09 -2.38 -0.02 2.56 16 26 H 0.02 0.79 7.76 -2.39 -0.02 0.77 16 27 H 0.09 2.45 8.10 -2.39 -0.02 2.43 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H -0.01 -0.52 7.76 -2.38 -0.02 -0.54 16 31 H 0.07 4.01 6.08 -2.39 -0.01 4.00 16 32 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -64.00 255.71 1.68 -62.32 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.07 Total: 4.80 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.17 Total: -13.59 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -4.29 Total: -82.26 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.30 Total: -18.14 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.00 1.68 -62.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259566820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.128 kcal (2) G-P(sol) polarization free energy of solvation -64.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds