Wall clock time and date at job start Mon Mar 30 2020 02:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99531 * 2 1 4 4 H 1.08999 * 109.52329 * 329.87666 * 3 2 1 5 5 C 1.53117 * 109.52270 * 90.00461 * 3 2 1 6 6 C 1.53036 * 109.27970 * 177.55937 * 5 3 2 7 7 N 1.46853 * 109.51853 * 300.81820 * 6 5 3 8 8 C 1.46907 * 110.99311 * 185.83876 * 7 6 5 9 9 C 1.46842 * 111.19700 * 61.74647 * 7 6 5 10 10 C 1.53041 * 109.52305 * 298.24890 * 9 7 6 11 11 H 1.09000 * 109.50613 * 299.24631 * 10 9 7 12 12 C 1.50694 * 109.50359 * 179.12362 * 10 9 7 13 13 H 1.08008 * 120.00061 * 240.20297 * 12 10 9 14 14 C 1.37870 * 120.00164 * 60.20116 * 12 10 9 15 15 N 1.31516 * 120.00153 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00320 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47145 * 59.99786 * 16 14 12 18 18 H 1.48503 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46928 * 300.00051 * 16 14 12 20 20 H 1.09002 * 109.46986 * 299.99541 * 1 2 3 21 21 H 1.08994 * 109.47795 * 60.00024 * 1 2 3 22 22 H 1.09008 * 109.47044 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.50130 * 297.49853 * 5 3 2 24 24 H 1.09001 * 109.50277 * 57.61260 * 5 3 2 25 25 H 1.08997 * 109.46025 * 60.83524 * 6 5 3 26 26 H 1.09000 * 109.46424 * 180.81561 * 6 5 3 27 27 H 1.08996 * 109.46924 * 63.96148 * 8 7 6 28 28 H 1.08996 * 109.46661 * 183.95192 * 8 7 6 29 29 H 1.08996 * 109.47266 * 303.95332 * 8 7 6 30 30 H 1.08998 * 109.46303 * 58.27046 * 9 7 6 31 31 H 1.09002 * 109.45813 * 178.24176 * 9 7 6 32 32 H 0.96993 * 120.00511 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3465 1.9997 -0.5156 5 6 2.2183 1.7730 1.4431 6 6 2.8963 3.1449 1.4371 7 7 4.1871 3.0513 0.7429 8 6 4.9287 4.3159 0.8379 9 6 4.0085 2.6499 -0.6582 10 6 3.3637 1.2631 -0.7147 11 1 4.0129 0.5395 -0.2218 12 6 3.1609 0.8607 -2.1527 13 1 2.1665 0.6556 -2.5211 14 6 4.2447 0.7545 -2.9983 15 7 5.4555 1.0048 -2.5500 16 14 3.9933 0.2564 -4.7810 17 1 3.1109 1.2449 -5.4514 18 1 5.3065 0.2148 -5.4732 19 1 3.3628 -1.0870 -4.8354 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.2533 1.8462 1.9447 24 1 2.8495 1.0573 1.9700 25 1 2.2582 3.8631 0.9222 26 1 3.0591 3.4741 2.4634 27 1 5.1731 4.5162 1.8810 28 1 5.8480 4.2423 0.2570 29 1 4.3152 5.1271 0.4460 30 1 3.3652 3.3704 -1.1633 31 1 4.9789 2.6196 -1.1538 32 1 6.2180 0.9297 -3.1447 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259566823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:06 Heat of formation + Delta-G solvation = -47.278139 kcal Electronic energy + Delta-G solvation = -13605.308869 eV Core-core repulsion = 11372.764767 eV Total energy + Delta-G solvation = -2232.544103 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.53442 -36.26471 -33.20695 -31.41698 -29.56398 -26.45270 -25.31973 -24.64157 -21.73871 -21.21760 -18.86847 -16.39470 -15.82034 -14.92817 -14.57865 -14.24715 -14.12061 -13.78579 -13.44128 -12.43072 -12.34948 -12.10228 -11.73564 -11.19060 -11.04727 -10.90014 -10.73346 -10.55155 -10.25389 -10.14293 -9.97278 -9.36508 -8.89524 -8.48783 -8.29229 -7.47475 -5.94435 -3.99003 3.35594 3.39987 3.43210 4.46991 4.63006 4.80202 5.38172 5.53817 5.71352 5.75436 5.80824 5.89923 5.91383 6.03707 6.09500 6.20880 6.26491 6.35317 6.37054 6.69640 6.81385 6.91463 7.00029 7.62579 7.71457 7.88087 7.99945 8.17086 8.28713 8.51184 9.03366 9.63939 11.12016 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027671 B = 0.015097 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.650421 B = 1854.210983 C = 2718.865040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.097 3.903 4 H 0.042 0.958 5 C -0.138 4.138 6 C 0.064 3.936 7 N -0.548 5.548 8 C 0.031 3.969 9 C 0.065 3.935 10 C 0.058 3.942 11 H 0.044 0.956 12 C -0.502 4.502 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.277 1.277 20 H 0.027 0.973 21 H 0.033 0.967 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.013 0.987 30 H 0.006 0.994 31 H 0.111 0.889 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.316 3.856 5.444 8.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C 0.039 3.961 4 H 0.060 0.940 5 C -0.176 4.176 6 C -0.065 4.065 7 N -0.272 5.272 8 C -0.118 4.118 9 C -0.062 4.062 10 C 0.039 3.961 11 H 0.062 0.938 12 C -0.541 4.541 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.045 0.955 21 H 0.052 0.948 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.032 0.968 30 H 0.025 0.975 31 H 0.129 0.871 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.728 3.332 5.605 8.055 hybrid contribution -0.850 0.667 -1.357 1.735 sum -5.578 3.999 4.247 8.072 Atomic orbital electron populations 1.22631 0.83663 1.01351 0.98748 1.88000 1.17277 1.28816 1.94730 1.22452 0.97466 0.82956 0.93214 0.94037 1.22113 0.99155 0.97185 0.99126 1.21920 0.90494 0.96108 0.97972 1.62102 1.17904 1.29232 1.17983 1.22254 0.98485 0.90339 1.00732 1.22461 1.03457 0.96375 0.83859 1.18768 0.89016 0.93311 0.94961 0.93796 1.21024 0.93310 1.45438 0.94316 0.92624 1.24965 0.95216 0.95353 0.98528 1.69854 0.98158 1.49534 1.35510 0.86659 0.77139 0.79199 0.85004 1.20470 1.21336 1.20237 0.95476 0.94792 0.90781 0.93129 0.90790 0.96062 0.91997 0.92694 0.91532 0.96834 0.97541 0.87119 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.82 101.05 1.09 1.66 16 2 O -0.37 -8.22 10.05 -35.23 -0.35 -8.57 16 3 C 0.10 2.14 2.03 -26.61 -0.05 2.09 16 4 H 0.04 0.91 7.79 -51.93 -0.40 0.51 16 5 C -0.14 -2.61 5.71 -26.65 -0.15 -2.76 16 6 C 0.06 1.16 5.46 -3.83 -0.02 1.14 16 7 N -0.55 -11.40 4.91 -242.96 -1.19 -12.60 16 8 C 0.03 0.53 9.62 60.07 0.58 1.11 16 9 C 0.07 1.58 4.51 -3.83 -0.02 1.56 16 10 C 0.06 1.52 1.99 -91.69 -0.18 1.33 16 11 H 0.04 1.29 8.14 -51.93 -0.42 0.86 16 12 C -0.50 -14.11 8.28 -34.45 -0.29 -14.39 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -25.66 11.34 55.43 0.63 -25.04 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H 0.03 0.40 7.94 -51.93 -0.41 -0.01 16 21 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 22 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 23 H 0.05 0.83 7.94 -51.93 -0.41 0.41 16 24 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.11 2.98 6.01 -51.93 -0.31 2.66 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 257.84 15.07 3.89 3.89 Total: -1.00 -29.47 257.84 -6.49 -35.96 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -5.30 Total: -3.56 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 0.86 Total: -6.67 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.56 Total: -37.63 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.35 Total: -8.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.47 -6.49 -35.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259566823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.318 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds