Wall clock time and date at job start Mon Mar 30 2020 02:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99531 * 2 1 4 4 H 1.08999 * 109.52329 * 329.87666 * 3 2 1 5 5 C 1.53117 * 109.52270 * 90.00461 * 3 2 1 6 6 C 1.53036 * 109.27970 * 177.55937 * 5 3 2 7 7 N 1.46853 * 109.51853 * 300.81820 * 6 5 3 8 8 C 1.46907 * 110.99311 * 185.83876 * 7 6 5 9 9 C 1.46842 * 111.19700 * 61.74647 * 7 6 5 10 10 C 1.53041 * 109.52305 * 298.24890 * 9 7 6 11 11 H 1.09000 * 109.50613 * 299.24631 * 10 9 7 12 12 C 1.50694 * 109.50359 * 179.12362 * 10 9 7 13 13 H 1.08008 * 120.00061 * 240.20297 * 12 10 9 14 14 C 1.37870 * 120.00164 * 60.20116 * 12 10 9 15 15 N 1.31516 * 120.00153 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00320 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47145 * 59.99786 * 16 14 12 18 18 H 1.48503 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46928 * 300.00051 * 16 14 12 20 20 H 1.09002 * 109.46986 * 299.99541 * 1 2 3 21 21 H 1.08994 * 109.47795 * 60.00024 * 1 2 3 22 22 H 1.09008 * 109.47044 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.50130 * 297.49853 * 5 3 2 24 24 H 1.09001 * 109.50277 * 57.61260 * 5 3 2 25 25 H 1.08997 * 109.46025 * 60.83524 * 6 5 3 26 26 H 1.09000 * 109.46424 * 180.81561 * 6 5 3 27 27 H 1.08996 * 109.46924 * 63.96148 * 8 7 6 28 28 H 1.08996 * 109.46661 * 183.95192 * 8 7 6 29 29 H 1.08996 * 109.47266 * 303.95332 * 8 7 6 30 30 H 1.08998 * 109.46303 * 58.27046 * 9 7 6 31 31 H 1.09002 * 109.45813 * 178.24176 * 9 7 6 32 32 H 0.96993 * 120.00511 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3465 1.9997 -0.5156 5 6 2.2183 1.7730 1.4431 6 6 2.8963 3.1449 1.4371 7 7 4.1871 3.0513 0.7429 8 6 4.9287 4.3159 0.8379 9 6 4.0085 2.6499 -0.6582 10 6 3.3637 1.2631 -0.7147 11 1 4.0129 0.5395 -0.2218 12 6 3.1609 0.8607 -2.1527 13 1 2.1665 0.6556 -2.5211 14 6 4.2447 0.7545 -2.9983 15 7 5.4555 1.0048 -2.5500 16 14 3.9933 0.2564 -4.7810 17 1 3.1109 1.2449 -5.4514 18 1 5.3065 0.2148 -5.4732 19 1 3.3628 -1.0870 -4.8354 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.2533 1.8462 1.9447 24 1 2.8495 1.0573 1.9700 25 1 2.2582 3.8631 0.9222 26 1 3.0591 3.4741 2.4634 27 1 5.1731 4.5162 1.8810 28 1 5.8480 4.2423 0.2570 29 1 4.3152 5.1271 0.4460 30 1 3.3652 3.3704 -1.1633 31 1 4.9789 2.6196 -1.1538 32 1 6.2180 0.9297 -3.1447 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259566823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:06 Heat of formation + Delta-G solvation = -68.111890 kcal Electronic energy + Delta-G solvation = -13606.212289 eV Core-core repulsion = 11372.764767 eV Total energy + Delta-G solvation = -2233.447522 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.21181 -37.86776 -35.23178 -33.05940 -31.42735 -27.89770 -27.16818 -26.28641 -23.48172 -22.92223 -20.62144 -18.46557 -17.47283 -16.78493 -16.19070 -15.89069 -15.76350 -15.42667 -14.97628 -14.18534 -14.02691 -13.75955 -13.19563 -12.90706 -12.69532 -12.61516 -12.54116 -12.26119 -12.08654 -11.91063 -11.70522 -11.15954 -10.90065 -10.46854 -10.11345 -9.09048 -8.07810 -6.20941 1.40967 1.43265 1.50774 2.43918 3.03435 3.19667 3.33321 4.05076 4.11747 4.29088 4.41076 4.55369 4.56921 4.60718 4.65197 4.74905 4.80202 4.86609 4.91961 5.01382 5.11474 5.20049 5.26405 5.58570 5.73862 5.92037 6.19963 6.42152 6.49234 6.61966 6.88201 7.45565 8.97027 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027671 B = 0.015097 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.650421 B = 1854.210983 C = 2718.865040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.101 3.899 4 H 0.041 0.959 5 C -0.130 4.130 6 C 0.063 3.937 7 N -0.566 5.566 8 C 0.031 3.969 9 C 0.083 3.917 10 C 0.055 3.945 11 H -0.003 1.003 12 C -0.524 4.524 13 H 0.048 0.952 14 C 0.013 3.987 15 N -0.916 5.916 16 Si 0.955 3.045 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.275 1.275 20 H 0.053 0.947 21 H 0.033 0.967 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.025 0.975 30 H -0.002 1.002 31 H 0.078 0.922 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 4.605 6.104 10.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C 0.043 3.957 4 H 0.059 0.941 5 C -0.168 4.168 6 C -0.065 4.065 7 N -0.291 5.291 8 C -0.117 4.117 9 C -0.045 4.045 10 C 0.036 3.964 11 H 0.015 0.985 12 C -0.562 4.562 13 H 0.067 0.933 14 C -0.186 4.186 15 N -0.556 5.556 16 Si 0.780 3.220 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.200 1.200 20 H 0.072 0.928 21 H 0.052 0.948 22 H 0.112 0.888 23 H 0.104 0.896 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.016 0.984 31 H 0.096 0.904 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.013 4.093 6.280 9.610 hybrid contribution -0.475 0.407 -1.521 1.645 sum -6.489 4.500 4.758 9.219 Atomic orbital electron populations 1.22886 0.80853 1.03199 1.00011 1.87938 1.20419 1.28907 1.95050 1.22262 0.95203 0.83247 0.94955 0.94054 1.22053 1.00808 0.97197 0.96771 1.22042 0.89166 0.95782 0.99489 1.62013 1.19915 1.31544 1.15624 1.22315 0.97719 0.89032 1.02617 1.21997 1.01098 0.95382 0.86039 1.18686 0.90770 0.92920 0.94026 0.98503 1.21320 0.93115 1.45940 0.95834 0.93333 1.25741 0.94933 0.95282 1.02633 1.70001 0.98774 1.49995 1.36825 0.85669 0.77341 0.78883 0.80098 1.19445 1.20695 1.20047 0.92808 0.94801 0.88775 0.89641 0.92193 0.95228 0.88553 0.89616 0.92661 0.95662 0.98352 0.90396 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.82 113.37 1.23 2.08 16 2 O -0.40 -17.79 10.05 -148.98 -1.50 -19.28 16 3 C 0.10 4.44 2.03 30.68 0.06 4.50 16 4 H 0.04 1.79 7.79 -2.39 -0.02 1.77 16 5 C -0.13 -4.68 5.71 30.65 0.18 -4.50 16 6 C 0.06 2.12 5.46 86.32 0.47 2.59 16 7 N -0.57 -23.09 4.91 -922.58 -4.53 -27.62 16 8 C 0.03 1.03 9.62 127.69 1.23 2.25 16 9 C 0.08 4.10 4.51 86.33 0.39 4.49 16 10 C 0.05 2.94 1.99 -11.49 -0.02 2.92 16 11 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 12 C -0.52 -30.18 8.28 25.60 0.21 -29.97 16 13 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 14 C 0.01 0.72 5.30 84.65 0.45 1.17 16 15 N -0.92 -54.29 11.34 21.44 0.24 -54.05 16 16 Si 0.95 44.80 29.54 68.60 2.03 46.82 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 H 0.05 1.41 7.94 -2.39 -0.02 1.39 16 21 H 0.03 1.06 8.09 -2.39 -0.02 1.04 16 22 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 23 H 0.09 2.47 7.94 -2.38 -0.02 2.45 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 2.62 8.12 -2.39 -0.02 2.60 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 28 H 0.05 1.92 8.02 -2.39 -0.02 1.90 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 31 H 0.08 4.35 6.01 -2.39 -0.01 4.34 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -65.01 257.84 1.50 -63.52 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.06 Total: 5.08 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.19 Total: -14.47 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -4.29 Total: -81.67 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -1.50 Total: -19.28 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -65.01 1.50 -63.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259566823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.594 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds