Wall clock time and date at job start Mon Mar 30 2020 02:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47999 * 111.00280 * 2 1 4 4 C 1.50513 * 112.74825 * 84.83639 * 3 2 1 5 5 C 1.54315 * 108.45993 * 93.84011 * 4 3 2 6 6 C 1.45876 * 112.11196 * 281.33914 * 5 4 3 7 7 C 1.54313 * 112.18923 * 61.16601 * 6 5 4 8 8 O 1.42901 * 109.62896 * 41.16343 * 7 6 5 9 9 C 1.50695 * 109.63424 * 161.55565 * 7 6 5 10 10 H 1.08006 * 120.00276 * 0.02562 * 9 7 6 11 11 C 1.37879 * 120.00369 * 180.02562 * 9 7 6 12 12 N 1.31516 * 119.99340 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00197 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47046 * 90.00133 * 13 11 9 15 15 H 1.48496 * 109.46667 * 209.99818 * 13 11 9 16 16 H 1.48497 * 109.47287 * 330.00069 * 13 11 9 17 17 C 1.47995 * 111.00237 * 128.72670 * 2 1 3 18 18 H 1.09006 * 109.46573 * 291.27799 * 1 2 3 19 19 H 1.09001 * 109.47306 * 51.27295 * 1 2 3 20 20 H 1.08991 * 109.47386 * 171.27735 * 1 2 3 21 21 H 1.08998 * 108.81112 * 205.70264 * 3 2 1 22 22 H 1.08998 * 108.81060 * 324.08851 * 3 2 1 23 23 H 1.08998 * 109.71668 * 334.11162 * 4 3 2 24 24 H 1.08997 * 109.58492 * 213.49205 * 4 3 2 25 25 H 1.09002 * 108.94072 * 160.68659 * 5 4 3 26 26 H 1.09001 * 108.93843 * 41.99287 * 5 4 3 27 27 H 1.09005 * 108.93901 * 181.85983 * 6 5 4 28 28 H 1.08998 * 108.94164 * 300.46855 * 6 5 4 29 29 H 0.96698 * 113.99636 * 179.97438 * 8 7 6 30 30 H 0.97003 * 119.99465 * 179.97438 * 12 11 9 31 31 H 1.09001 * 108.81250 * 70.47657 * 17 2 1 32 32 H 1.09001 * 108.72439 * 312.14163 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3817 0.0000 4 6 2.0914 1.9698 1.3824 5 6 3.5147 1.7226 1.9249 6 6 3.6885 0.3575 2.4090 7 6 3.4778 -0.6877 1.2934 8 8 4.0878 -0.2297 0.0850 9 6 4.0939 -1.9997 1.7058 10 1 4.5863 -2.0879 2.6630 11 6 4.0290 -3.0876 0.8612 12 7 3.4289 -2.9803 -0.3041 13 14 4.7921 -4.7140 1.3728 14 1 3.7826 -5.5288 2.0957 15 1 5.2481 -5.4482 0.1652 16 1 5.9520 -4.4581 2.2640 17 6 1.9994 -0.8644 1.0779 18 1 -0.3633 0.3730 0.9577 19 1 -0.3634 0.6429 -0.8017 20 1 -0.3634 -1.0157 -0.1558 21 1 2.9933 1.3766 -0.4475 22 1 1.3453 2.0093 -0.6052 23 1 1.3622 1.4902 2.0353 24 1 1.8977 3.0415 1.3372 25 1 3.7065 2.4155 2.7441 26 1 4.2345 1.9097 1.1280 27 1 4.6967 0.2495 2.8089 28 1 2.9709 0.1714 3.2081 29 1 3.9935 -0.8400 -0.6590 30 1 3.3836 -3.7456 -0.8985 31 1 1.8035 -1.9056 0.8219 32 1 1.4782 -0.6269 2.0053 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259581110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:04 Heat of formation + Delta-G solvation = -44.746962 kcal Electronic energy + Delta-G solvation = -14131.230032 eV Core-core repulsion = 11898.795690 eV Total energy + Delta-G solvation = -2232.434343 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.69509 -34.67825 -33.28926 -31.94588 -29.97667 -26.99786 -25.37943 -23.84475 -22.40316 -19.24874 -18.68505 -16.90652 -15.39979 -14.97614 -14.36880 -14.12040 -13.56071 -13.27391 -12.77130 -12.40206 -12.17140 -11.57684 -11.34530 -11.11991 -11.03163 -10.82896 -10.56792 -10.44750 -10.32810 -9.98769 -9.82439 -9.49567 -8.79471 -8.49998 -7.86477 -7.08120 -6.06194 -4.21163 3.26577 3.34321 3.37959 4.36734 4.88833 5.21058 5.53175 5.65306 5.71628 5.98938 6.06753 6.16298 6.26842 6.33624 6.36362 6.44927 6.61971 6.62736 6.78938 6.96779 7.01367 7.15028 7.20036 7.57735 7.77198 7.88735 8.12086 8.28484 8.36718 8.82951 9.48086 9.75625 10.93948 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045186 B = 0.013849 C = 0.011933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.519044 B = 2021.301857 C = 2345.846249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.535 5.535 3 C 0.058 3.942 4 C -0.143 4.143 5 C -0.105 4.105 6 C -0.105 4.105 7 C 0.259 3.741 8 O -0.580 6.580 9 C -0.540 4.540 10 H 0.058 0.942 11 C 0.069 3.931 12 N -0.880 5.880 13 Si 0.895 3.105 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.058 3.942 18 H 0.007 0.993 19 H 0.052 0.948 20 H 0.058 0.942 21 H 0.099 0.901 22 H 0.040 0.960 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.383 0.617 30 H 0.266 0.734 31 H 0.094 0.906 32 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 5.332 1.261 6.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.260 5.260 3 C -0.070 4.070 4 C -0.182 4.182 5 C -0.142 4.142 6 C -0.142 4.142 7 C 0.219 3.781 8 O -0.390 6.390 9 C -0.579 4.579 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.520 5.520 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.069 4.069 18 H 0.025 0.975 19 H 0.071 0.929 20 H 0.077 0.923 21 H 0.117 0.883 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.234 0.766 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -3.043 5.533 1.062 6.403 hybrid contribution -0.207 -1.123 0.813 1.402 sum -3.250 4.409 1.875 5.790 Atomic orbital electron populations 1.22277 0.90016 1.01031 0.98261 1.61731 1.04590 1.10658 1.48995 1.22063 1.02200 0.87922 0.94777 1.21886 0.97720 0.99281 0.99329 1.20419 0.96562 0.97263 0.99997 1.20580 1.00631 0.94743 0.98260 1.18293 0.87320 0.89992 0.82487 1.86022 1.80367 1.50157 1.22437 1.21726 1.36901 0.95446 1.03780 0.92357 1.25045 0.94447 0.98861 0.94990 1.69737 1.42196 1.31304 1.08731 0.86555 0.79607 0.83457 0.78104 1.20715 1.21109 1.19920 1.22618 0.97744 0.98031 0.88537 0.97478 0.92907 0.92334 0.88340 0.94115 0.92995 0.93067 0.94589 0.91251 0.92888 0.93609 0.76636 0.92419 0.88792 0.98397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.46 60.06 0.57 1.17 16 2 N -0.54 -11.51 4.63 -244.17 -1.13 -12.65 16 3 C 0.06 1.13 5.06 -4.46 -0.02 1.11 16 4 C -0.14 -2.59 5.59 -27.29 -0.15 -2.74 16 5 C -0.10 -2.02 5.21 -29.41 -0.15 -2.17 16 6 C -0.10 -2.30 4.54 -29.42 -0.13 -2.43 16 7 C 0.26 6.43 0.67 -92.36 -0.06 6.37 16 8 O -0.58 -14.84 8.80 -35.23 -0.31 -15.15 16 9 C -0.54 -14.61 8.13 -34.44 -0.28 -14.89 16 10 H 0.06 1.58 7.73 -52.48 -0.41 1.17 16 11 C 0.07 1.84 4.96 -17.82 -0.09 1.76 16 12 N -0.88 -23.68 10.04 55.43 0.56 -23.13 16 13 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 17 C 0.06 1.38 4.08 -4.50 -0.02 1.36 16 18 H 0.01 0.12 7.81 -51.93 -0.41 -0.29 16 19 H 0.05 0.85 7.83 -51.93 -0.41 0.45 16 20 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 21 H 0.10 2.10 5.26 -51.93 -0.27 1.83 16 22 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 23 H 0.05 0.98 6.71 -51.93 -0.35 0.63 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.40 6.82 -51.93 -0.35 1.05 16 27 H 0.05 1.17 7.97 -51.93 -0.41 0.76 16 28 H 0.05 0.97 7.52 -51.93 -0.39 0.58 16 29 H 0.38 10.37 7.12 45.56 0.32 10.70 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.09 2.52 5.99 -51.93 -0.31 2.21 16 32 H 0.00 -0.05 6.44 -51.93 -0.33 -0.38 16 LS Contribution 239.63 15.07 3.61 3.61 Total: -1.00 -26.76 239.63 -6.76 -33.52 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.12 Total: 8.48 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.34 Total: -10.47 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.57 Total: -35.77 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.31 Total: -15.15 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -26.76 -6.76 -33.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.230 kcal (2) G-P(sol) polarization free energy of solvation -26.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds