Wall clock time and date at job start Mon Mar 30 2020 02:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47999 * 111.00280 * 2 1 4 4 C 1.50513 * 112.74825 * 84.83639 * 3 2 1 5 5 C 1.54315 * 108.45993 * 93.84011 * 4 3 2 6 6 C 1.45876 * 112.11196 * 281.33914 * 5 4 3 7 7 C 1.54313 * 112.18923 * 61.16601 * 6 5 4 8 8 O 1.42901 * 109.62896 * 41.16343 * 7 6 5 9 9 C 1.50695 * 109.63424 * 161.55565 * 7 6 5 10 10 H 1.08006 * 120.00276 * 0.02562 * 9 7 6 11 11 C 1.37879 * 120.00369 * 180.02562 * 9 7 6 12 12 N 1.31516 * 119.99340 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00197 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47046 * 90.00133 * 13 11 9 15 15 H 1.48496 * 109.46667 * 209.99818 * 13 11 9 16 16 H 1.48497 * 109.47287 * 330.00069 * 13 11 9 17 17 C 1.47995 * 111.00237 * 128.72670 * 2 1 3 18 18 H 1.09006 * 109.46573 * 291.27799 * 1 2 3 19 19 H 1.09001 * 109.47306 * 51.27295 * 1 2 3 20 20 H 1.08991 * 109.47386 * 171.27735 * 1 2 3 21 21 H 1.08998 * 108.81112 * 205.70264 * 3 2 1 22 22 H 1.08998 * 108.81060 * 324.08851 * 3 2 1 23 23 H 1.08998 * 109.71668 * 334.11162 * 4 3 2 24 24 H 1.08997 * 109.58492 * 213.49205 * 4 3 2 25 25 H 1.09002 * 108.94072 * 160.68659 * 5 4 3 26 26 H 1.09001 * 108.93843 * 41.99287 * 5 4 3 27 27 H 1.09005 * 108.93901 * 181.85983 * 6 5 4 28 28 H 1.08998 * 108.94164 * 300.46855 * 6 5 4 29 29 H 0.96698 * 113.99636 * 179.97438 * 8 7 6 30 30 H 0.97003 * 119.99465 * 179.97438 * 12 11 9 31 31 H 1.09001 * 108.81250 * 70.47657 * 17 2 1 32 32 H 1.09001 * 108.72439 * 312.14163 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3817 0.0000 4 6 2.0914 1.9698 1.3824 5 6 3.5147 1.7226 1.9249 6 6 3.6885 0.3575 2.4090 7 6 3.4778 -0.6877 1.2934 8 8 4.0878 -0.2297 0.0850 9 6 4.0939 -1.9997 1.7058 10 1 4.5863 -2.0879 2.6630 11 6 4.0290 -3.0876 0.8612 12 7 3.4289 -2.9803 -0.3041 13 14 4.7921 -4.7140 1.3728 14 1 3.7826 -5.5288 2.0957 15 1 5.2481 -5.4482 0.1652 16 1 5.9520 -4.4581 2.2640 17 6 1.9994 -0.8644 1.0779 18 1 -0.3633 0.3730 0.9577 19 1 -0.3634 0.6429 -0.8017 20 1 -0.3634 -1.0157 -0.1558 21 1 2.9933 1.3766 -0.4475 22 1 1.3453 2.0093 -0.6052 23 1 1.3622 1.4902 2.0353 24 1 1.8977 3.0415 1.3372 25 1 3.7065 2.4155 2.7441 26 1 4.2345 1.9097 1.1280 27 1 4.6967 0.2495 2.8089 28 1 2.9709 0.1714 3.2081 29 1 3.9935 -0.8400 -0.6590 30 1 3.3836 -3.7456 -0.8985 31 1 1.8035 -1.9056 0.8219 32 1 1.4782 -0.6269 2.0053 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259581110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:04 Heat of formation + Delta-G solvation = -63.387780 kcal Electronic energy + Delta-G solvation = -14132.038359 eV Core-core repulsion = 11898.795690 eV Total energy + Delta-G solvation = -2233.242669 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.43032 -36.49033 -34.94839 -33.96865 -31.77374 -28.64528 -27.28569 -25.47505 -24.13178 -20.84933 -20.52042 -18.89665 -17.27066 -16.73724 -16.10427 -15.81139 -15.31171 -15.03927 -14.40340 -14.08841 -13.91779 -13.24388 -13.00240 -12.96316 -12.69659 -12.55959 -12.38992 -12.27041 -12.16295 -11.72403 -11.47560 -11.15126 -10.63039 -10.51330 -9.83431 -8.72975 -8.08568 -6.31381 1.40986 1.43714 1.52730 2.41898 3.05127 3.38730 3.97204 4.09658 4.19198 4.38147 4.51281 4.55710 4.65174 4.74261 4.87228 4.89516 4.98000 5.04048 5.16608 5.29199 5.36618 5.48894 5.54606 5.61650 5.88373 5.94267 6.24089 6.54669 6.64451 6.76946 7.41071 7.66058 8.89136 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045186 B = 0.013849 C = 0.011933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.519044 B = 2021.301857 C = 2345.846249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.555 5.555 3 C 0.058 3.942 4 C -0.136 4.136 5 C -0.104 4.104 6 C -0.101 4.101 7 C 0.247 3.753 8 O -0.579 6.579 9 C -0.569 4.569 10 H 0.048 0.952 11 C 0.031 3.969 12 N -0.894 5.894 13 Si 0.954 3.046 14 H -0.276 1.276 15 H -0.281 1.281 16 H -0.275 1.275 17 C 0.074 3.926 18 H 0.017 0.983 19 H 0.078 0.922 20 H 0.051 0.949 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.046 0.954 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.372 0.628 30 H 0.267 0.733 31 H 0.059 0.941 32 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 6.222 1.494 7.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.280 5.280 3 C -0.069 4.069 4 C -0.174 4.174 5 C -0.141 4.141 6 C -0.139 4.139 7 C 0.207 3.793 8 O -0.387 6.387 9 C -0.607 4.607 10 H 0.066 0.934 11 C -0.170 4.170 12 N -0.533 5.533 13 Si 0.780 3.220 14 H -0.202 1.202 15 H -0.206 1.206 16 H -0.200 1.200 17 C -0.054 4.054 18 H 0.035 0.965 19 H 0.096 0.904 20 H 0.069 0.931 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.221 0.779 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -3.634 6.439 1.301 7.507 hybrid contribution -0.035 -1.387 0.721 1.564 sum -3.669 5.052 2.022 6.563 Atomic orbital electron populations 1.22308 0.87954 1.01369 0.99726 1.61584 1.06569 1.11796 1.48061 1.22042 1.01554 0.87201 0.96122 1.21828 0.96492 1.01212 0.97908 1.20384 0.97254 0.95927 1.00550 1.20538 1.00149 0.95816 0.97348 1.18466 0.87781 0.90229 0.82804 1.86041 1.80673 1.49648 1.22369 1.22019 1.37803 0.97153 1.03757 0.93350 1.25666 0.94725 1.01584 0.95021 1.69833 1.42350 1.31942 1.09173 0.85641 0.78722 0.79907 0.77760 1.20211 1.20628 1.20044 1.22218 0.97201 0.96816 0.89124 0.96497 0.90375 0.93055 0.90561 0.91493 0.93572 0.89687 0.91767 0.92517 0.93910 0.93190 0.77864 0.92390 0.92225 0.98544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.20 9.46 127.69 1.21 2.41 16 2 N -0.56 -23.29 4.63 -926.42 -4.29 -27.58 16 3 C 0.06 2.13 5.06 85.29 0.43 2.57 16 4 C -0.14 -4.50 5.59 30.24 0.17 -4.33 16 5 C -0.10 -3.78 5.21 28.86 0.15 -3.63 16 6 C -0.10 -4.37 4.54 28.86 0.13 -4.24 16 7 C 0.25 12.35 0.67 -11.92 -0.01 12.34 16 8 O -0.58 -29.94 8.80 -148.98 -1.31 -31.25 16 9 C -0.57 -31.23 8.13 25.60 0.21 -31.02 16 10 H 0.05 2.67 7.73 -2.91 -0.02 2.65 16 11 C 0.03 1.68 4.96 84.65 0.42 2.10 16 12 N -0.89 -48.63 10.04 21.45 0.22 -48.41 16 13 Si 0.95 42.91 29.54 68.60 2.03 44.93 16 14 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 17 C 0.07 3.55 4.08 85.27 0.35 3.90 16 18 H 0.02 0.55 7.81 -2.38 -0.02 0.53 16 19 H 0.08 2.29 7.83 -2.39 -0.02 2.27 16 20 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.08 3.17 5.26 -2.39 -0.01 3.16 16 22 H 0.07 2.10 7.66 -2.39 -0.02 2.08 16 23 H 0.05 1.60 6.71 -2.39 -0.02 1.59 16 24 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 2.21 6.82 -2.39 -0.02 2.20 16 27 H 0.04 1.89 7.97 -2.38 -0.02 1.87 16 28 H 0.05 2.08 7.52 -2.39 -0.02 2.07 16 29 H 0.37 20.59 7.12 -74.06 -0.53 20.06 16 30 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.06 3.25 5.99 -2.39 -0.01 3.24 16 32 H 0.00 -0.17 6.44 -2.39 -0.02 -0.18 16 Total: -1.00 -56.59 239.63 0.27 -56.32 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.57 Total: 25.91 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 3.06 Total: -19.91 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -4.08 Total: -75.99 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.31 Total: -31.25 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -56.59 0.27 -56.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.071 kcal (2) G-P(sol) polarization free energy of solvation -56.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds