Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47996 * 111.00235 * 2 1 4 4 C 1.50443 * 112.82970 * 275.16475 * 3 2 1 5 5 C 1.54313 * 108.49797 * 266.26768 * 4 3 2 6 6 C 1.45886 * 112.18174 * 78.53552 * 5 4 3 7 7 C 1.54309 * 112.18735 * 298.88089 * 6 5 4 8 8 H 1.09007 * 109.79618 * 318.73509 * 7 6 5 9 9 O 1.42897 * 109.63445 * 198.24087 * 7 6 5 10 10 C 1.48000 * 111.00017 * 231.28283 * 2 1 3 11 11 H 1.09002 * 108.81276 * 47.78889 * 10 2 1 12 12 C 1.50702 * 108.80870 * 289.52131 * 10 2 1 13 13 H 1.07998 * 120.00195 * 305.11389 * 12 10 2 14 14 C 1.37875 * 120.00202 * 125.11733 * 12 10 2 15 15 N 1.31519 * 120.00003 * 6.17066 * 14 12 10 16 16 Si 1.86802 * 120.00338 * 186.17373 * 14 12 10 17 17 H 1.48496 * 109.47122 * 89.99751 * 16 14 12 18 18 H 1.48497 * 109.47244 * 209.99690 * 16 14 12 19 19 H 1.48503 * 109.46855 * 330.00121 * 16 14 12 20 20 H 1.09001 * 109.47487 * 184.84419 * 1 2 3 21 21 H 1.09003 * 109.47008 * 64.84346 * 1 2 3 22 22 H 1.09005 * 109.47170 * 304.84650 * 1 2 3 23 23 H 1.09001 * 108.81212 * 36.02809 * 3 2 1 24 24 H 1.09004 * 108.81353 * 154.29285 * 3 2 1 25 25 H 1.08997 * 109.63419 * 146.56903 * 4 3 2 26 26 H 1.08998 * 109.63251 * 25.96853 * 4 3 2 27 27 H 1.08996 * 108.94259 * 317.84362 * 5 4 3 28 28 H 1.08995 * 108.94292 * 199.22737 * 5 4 3 29 29 H 1.09000 * 108.93743 * 178.18017 * 6 5 4 30 30 H 1.09007 * 108.93608 * 59.57808 * 6 5 4 31 31 H 0.96699 * 114.00164 * 60.98887 * 9 7 6 32 32 H 0.96993 * 120.00027 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3816 0.0000 4 6 2.0921 1.9713 -1.3809 5 6 3.5146 1.7227 -1.9250 6 6 3.6883 0.3576 -2.4092 7 6 3.4777 -0.6876 -1.2937 8 1 3.9437 -0.3418 -0.3710 9 8 4.0578 -1.9330 -1.6869 10 6 1.9994 -0.8642 -1.0781 11 1 1.4781 -0.6286 -2.0059 12 6 1.7285 -2.3039 -0.7243 13 1 2.0680 -2.7008 0.2210 14 6 1.0472 -3.1144 -1.6074 15 7 0.7403 -2.6689 -2.8062 16 14 0.5600 -4.8453 -1.1014 17 1 -0.7860 -4.8175 -0.4750 18 1 0.5302 -5.7215 -2.2999 19 1 1.5487 -5.3728 -0.1269 20 1 -0.3634 -1.0240 0.0868 21 1 -0.3633 0.4369 -0.9302 22 1 -0.3634 0.5872 0.8434 23 1 1.3464 2.0088 0.6069 24 1 2.9933 1.3766 0.4476 25 1 1.8997 3.0432 -1.3352 26 1 1.3617 1.4927 -2.0333 27 1 4.2355 1.9102 -1.1293 28 1 3.7062 2.4156 -2.7442 29 1 4.6964 0.2498 -2.8094 30 1 2.9706 0.1717 -3.2083 31 1 5.0112 -1.8910 -1.8429 32 1 0.2608 -3.2389 -3.4274 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259710562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -43.885705 kcal Electronic energy + Delta-G solvation = -13952.954348 eV Core-core repulsion = 11720.557353 eV Total energy + Delta-G solvation = -2232.396996 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.68436 -35.18992 -33.69964 -32.16974 -29.76954 -27.21397 -25.41891 -22.91419 -22.75325 -19.95758 -18.49798 -16.64212 -16.16911 -14.88261 -14.43031 -14.02789 -13.67686 -13.64091 -12.92440 -12.62440 -12.32286 -11.58344 -11.42206 -11.12609 -10.95530 -10.83049 -10.61962 -10.38684 -10.31480 -9.98266 -9.90318 -9.38967 -8.89811 -8.61039 -8.30089 -6.94129 -5.85483 -3.84496 3.40204 3.46467 3.52008 4.55386 4.86330 5.21128 5.33823 5.44431 5.58371 5.84401 5.95105 6.00250 6.16171 6.27481 6.27802 6.39988 6.45837 6.50201 6.58776 6.64659 6.80621 7.01011 7.02046 7.22632 7.63903 8.05621 8.10093 8.35174 8.72354 8.93239 9.25319 9.76047 11.21867 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040174 B = 0.014303 C = 0.012104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.793545 B = 1957.102160 C = 2312.713916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.551 5.551 3 C 0.054 3.946 4 C -0.150 4.150 5 C -0.106 4.106 6 C -0.155 4.155 7 C 0.125 3.875 8 H 0.034 0.966 9 O -0.524 6.524 10 C 0.198 3.802 11 H 0.052 0.948 12 C -0.464 4.464 13 H 0.054 0.946 14 C 0.067 3.933 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.274 1.274 20 H 0.074 0.926 21 H 0.008 0.992 22 H 0.040 0.960 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.339 0.661 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 7.356 1.865 8.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.278 5.278 3 C -0.074 4.074 4 C -0.189 4.189 5 C -0.143 4.143 6 C -0.193 4.193 7 C 0.065 3.935 8 H 0.052 0.948 9 O -0.324 6.324 10 C 0.093 3.907 11 H 0.069 0.931 12 C -0.504 4.504 13 H 0.072 0.928 14 C -0.134 4.134 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.199 1.199 20 H 0.092 0.908 21 H 0.026 0.974 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.182 0.818 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.958 6.882 2.161 7.797 hybrid contribution 0.056 -0.289 -0.730 0.787 sum 3.015 6.593 1.431 7.390 Atomic orbital electron populations 1.21983 0.88377 1.02069 0.97253 1.62169 1.06784 1.07810 1.51003 1.21888 1.00102 0.90776 0.94663 1.21953 0.97435 0.99890 0.99643 1.20421 0.96905 0.97022 0.99977 1.21373 1.01086 0.95843 1.00998 1.21337 0.97596 0.82126 0.92400 0.94787 1.87062 1.22632 1.31703 1.90956 1.19145 0.88890 0.92428 0.90200 0.93066 1.20696 1.33619 0.93328 1.02714 0.92763 1.24896 0.95690 0.98092 0.94766 1.69912 1.41176 1.36870 1.05683 0.86604 0.78634 0.84852 0.77891 1.20994 1.21590 1.19902 0.90768 0.97398 0.94113 0.92980 0.92297 0.92641 0.91417 0.92796 0.93228 0.93407 0.91411 0.81836 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.11 9.27 60.06 0.56 1.67 16 2 N -0.55 -12.38 4.62 -237.57 -1.10 -13.48 16 3 C 0.05 0.99 5.15 -4.50 -0.02 0.97 16 4 C -0.15 -2.57 5.60 -27.32 -0.15 -2.73 16 5 C -0.11 -1.73 5.30 -29.41 -0.16 -1.88 16 6 C -0.16 -2.97 4.96 -29.41 -0.15 -3.12 16 7 C 0.13 2.81 2.96 -27.32 -0.08 2.73 16 8 H 0.03 0.74 7.10 -51.92 -0.37 0.37 16 9 O -0.52 -12.33 11.89 -35.23 -0.42 -12.74 16 10 C 0.20 5.00 1.50 -69.54 -0.10 4.90 16 11 H 0.05 1.46 5.27 -51.93 -0.27 1.18 16 12 C -0.46 -13.17 6.20 -34.44 -0.21 -13.39 16 13 H 0.05 1.60 7.82 -52.49 -0.41 1.19 16 14 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 15 N -0.90 -26.61 12.62 55.43 0.70 -25.91 16 16 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 20 H 0.07 1.75 7.33 -51.93 -0.38 1.37 16 21 H 0.01 0.16 7.79 -51.93 -0.40 -0.24 16 22 H 0.04 0.74 7.93 -51.93 -0.41 0.33 16 23 H 0.05 0.86 7.72 -51.93 -0.40 0.46 16 24 H 0.06 1.05 6.59 -51.93 -0.34 0.71 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.34 6.66 -51.93 -0.35 1.00 16 27 H 0.05 0.81 7.52 -51.93 -0.39 0.42 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.07 1.48 7.52 -51.93 -0.39 1.09 16 31 H 0.34 6.01 9.06 45.56 0.41 6.43 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 247.41 15.07 3.73 3.73 Total: -1.00 -30.97 247.41 -6.63 -37.61 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.11 Total: 2.53 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.42 Total: -9.04 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: -0.40 Total: -39.39 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.42 Total: -12.74 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.97 -6.63 -37.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259710562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.279 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds