Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47996 * 111.00235 * 2 1 4 4 C 1.50443 * 112.82970 * 275.16475 * 3 2 1 5 5 C 1.54313 * 108.49797 * 266.26768 * 4 3 2 6 6 C 1.45886 * 112.18174 * 78.53552 * 5 4 3 7 7 C 1.54309 * 112.18735 * 298.88089 * 6 5 4 8 8 H 1.09007 * 109.79618 * 318.73509 * 7 6 5 9 9 O 1.42897 * 109.63445 * 198.24087 * 7 6 5 10 10 C 1.48000 * 111.00017 * 231.28283 * 2 1 3 11 11 H 1.09002 * 108.81276 * 47.78889 * 10 2 1 12 12 C 1.50702 * 108.80870 * 289.52131 * 10 2 1 13 13 H 1.07998 * 120.00195 * 305.11389 * 12 10 2 14 14 C 1.37875 * 120.00202 * 125.11733 * 12 10 2 15 15 N 1.31519 * 120.00003 * 6.17066 * 14 12 10 16 16 Si 1.86802 * 120.00338 * 186.17373 * 14 12 10 17 17 H 1.48496 * 109.47122 * 89.99751 * 16 14 12 18 18 H 1.48497 * 109.47244 * 209.99690 * 16 14 12 19 19 H 1.48503 * 109.46855 * 330.00121 * 16 14 12 20 20 H 1.09001 * 109.47487 * 184.84419 * 1 2 3 21 21 H 1.09003 * 109.47008 * 64.84346 * 1 2 3 22 22 H 1.09005 * 109.47170 * 304.84650 * 1 2 3 23 23 H 1.09001 * 108.81212 * 36.02809 * 3 2 1 24 24 H 1.09004 * 108.81353 * 154.29285 * 3 2 1 25 25 H 1.08997 * 109.63419 * 146.56903 * 4 3 2 26 26 H 1.08998 * 109.63251 * 25.96853 * 4 3 2 27 27 H 1.08996 * 108.94259 * 317.84362 * 5 4 3 28 28 H 1.08995 * 108.94292 * 199.22737 * 5 4 3 29 29 H 1.09000 * 108.93743 * 178.18017 * 6 5 4 30 30 H 1.09007 * 108.93608 * 59.57808 * 6 5 4 31 31 H 0.96699 * 114.00164 * 60.98887 * 9 7 6 32 32 H 0.96993 * 120.00027 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3816 0.0000 4 6 2.0921 1.9713 -1.3809 5 6 3.5146 1.7227 -1.9250 6 6 3.6883 0.3576 -2.4092 7 6 3.4777 -0.6876 -1.2937 8 1 3.9437 -0.3418 -0.3710 9 8 4.0578 -1.9330 -1.6869 10 6 1.9994 -0.8642 -1.0781 11 1 1.4781 -0.6286 -2.0059 12 6 1.7285 -2.3039 -0.7243 13 1 2.0680 -2.7008 0.2210 14 6 1.0472 -3.1144 -1.6074 15 7 0.7403 -2.6689 -2.8062 16 14 0.5600 -4.8453 -1.1014 17 1 -0.7860 -4.8175 -0.4750 18 1 0.5302 -5.7215 -2.2999 19 1 1.5487 -5.3728 -0.1269 20 1 -0.3634 -1.0240 0.0868 21 1 -0.3633 0.4369 -0.9302 22 1 -0.3634 0.5872 0.8434 23 1 1.3464 2.0088 0.6069 24 1 2.9933 1.3766 0.4476 25 1 1.8997 3.0432 -1.3352 26 1 1.3617 1.4927 -2.0333 27 1 4.2355 1.9102 -1.1293 28 1 3.7062 2.4156 -2.7442 29 1 4.6964 0.2498 -2.8094 30 1 2.9706 0.1717 -3.2083 31 1 5.0112 -1.8910 -1.8429 32 1 0.2608 -3.2389 -3.4274 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259710562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -67.922538 kcal Electronic energy + Delta-G solvation = -13953.996664 eV Core-core repulsion = 11720.557353 eV Total energy + Delta-G solvation = -2233.439311 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.33002 -36.92531 -35.41295 -34.14013 -31.51771 -28.94616 -27.29596 -24.58698 -24.53377 -21.46485 -20.27049 -18.52344 -18.10227 -16.67746 -16.31405 -15.56554 -15.41855 -15.23319 -14.55419 -14.29738 -14.11979 -13.30580 -13.09830 -13.03078 -12.78570 -12.67890 -12.34348 -12.11135 -11.87454 -11.67912 -11.41351 -11.30737 -10.84821 -10.41694 -10.33204 -8.75059 -8.00609 -6.07083 1.39939 1.40610 1.51467 2.47664 3.05017 3.49124 3.83076 3.93775 4.02356 4.29950 4.43485 4.50421 4.58678 4.69726 4.78725 4.90533 4.95287 4.97299 5.19978 5.21207 5.27632 5.30131 5.44935 5.53818 5.63642 5.82253 6.24019 6.45582 6.87051 7.04786 7.41120 7.56526 9.04128 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040174 B = 0.014303 C = 0.012104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.793545 B = 1957.102160 C = 2312.713916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.565 5.565 3 C 0.052 3.948 4 C -0.146 4.146 5 C -0.106 4.106 6 C -0.143 4.143 7 C 0.123 3.877 8 H 0.045 0.955 9 O -0.557 6.557 10 C 0.203 3.797 11 H 0.012 0.988 12 C -0.473 4.473 13 H 0.036 0.964 14 C 0.018 3.982 15 N -0.928 5.928 16 Si 0.947 3.053 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.273 1.273 20 H 0.042 0.958 21 H -0.002 1.002 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.364 0.636 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.472 8.754 2.751 10.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.291 5.291 3 C -0.076 4.076 4 C -0.185 4.185 5 C -0.143 4.143 6 C -0.181 4.181 7 C 0.064 3.936 8 H 0.063 0.937 9 O -0.360 6.360 10 C 0.098 3.902 11 H 0.030 0.970 12 C -0.512 4.512 13 H 0.054 0.946 14 C -0.179 4.179 15 N -0.569 5.569 16 Si 0.773 3.227 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.198 1.198 20 H 0.061 0.939 21 H 0.016 0.984 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.210 0.790 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.928 8.294 3.062 9.674 hybrid contribution -0.207 -0.675 -0.959 1.191 sum 3.721 7.619 2.102 8.736 Atomic orbital electron populations 1.21929 0.88224 1.00663 0.98252 1.61994 1.07105 1.10452 1.49544 1.22026 1.01023 0.88542 0.96003 1.21911 0.97157 1.01507 0.97949 1.20439 0.96833 0.95432 1.01582 1.21236 1.01400 0.96663 0.98755 1.21341 0.95576 0.82660 0.94068 0.93689 1.86965 1.25030 1.32887 1.91146 1.18969 0.90598 0.91496 0.89151 0.96964 1.20900 1.33271 0.95348 1.01681 0.94562 1.25558 0.96029 1.01555 0.94791 1.70043 1.42331 1.38007 1.06567 0.85736 0.78553 0.80844 0.77534 1.20084 1.21309 1.19751 0.93937 0.98387 0.90452 0.90590 0.91120 0.89211 0.94961 0.90457 0.90773 0.90872 0.95099 0.79009 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.48 9.27 127.69 1.18 3.66 16 2 N -0.56 -25.00 4.62 -905.54 -4.18 -29.18 16 3 C 0.05 1.75 5.15 85.27 0.44 2.19 16 4 C -0.15 -4.64 5.60 30.21 0.17 -4.48 16 5 C -0.11 -3.10 5.30 28.86 0.15 -2.95 16 6 C -0.14 -5.26 4.96 28.86 0.14 -5.12 16 7 C 0.12 5.44 2.96 30.21 0.09 5.53 16 8 H 0.05 1.88 7.10 -2.38 -0.02 1.86 16 9 O -0.56 -26.10 11.89 -148.98 -1.77 -27.87 16 10 C 0.20 10.43 1.50 43.13 0.06 10.49 16 11 H 0.01 0.73 5.27 -2.39 -0.01 0.72 16 12 C -0.47 -27.41 6.20 25.60 0.16 -27.25 16 13 H 0.04 2.18 7.82 -2.91 -0.02 2.15 16 14 C 0.02 1.08 5.45 84.65 0.46 1.54 16 15 N -0.93 -56.84 12.62 21.45 0.27 -56.57 16 16 Si 0.95 46.65 29.54 68.60 2.03 48.68 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 18 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 20 H 0.04 2.05 7.33 -2.39 -0.02 2.03 16 21 H 0.00 -0.11 7.79 -2.39 -0.02 -0.12 16 22 H 0.08 2.68 7.93 -2.38 -0.02 2.66 16 23 H 0.08 2.21 7.72 -2.39 -0.02 2.20 16 24 H 0.07 2.25 6.59 -2.39 -0.02 2.23 16 25 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.03 1.26 6.66 -2.39 -0.02 1.24 16 27 H 0.08 1.97 7.52 -2.39 -0.02 1.95 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 2.30 8.10 -2.39 -0.02 2.28 16 30 H 0.03 1.35 7.52 -2.38 -0.02 1.33 16 31 H 0.36 12.49 9.06 -74.06 -0.67 11.82 16 32 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -68.40 247.41 -0.37 -68.77 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.43 Total: 12.56 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 2.86 Total: -16.39 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -3.91 Total: -85.75 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.77 Total: -27.87 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -68.40 -0.37 -68.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259710562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.848 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds