Wall clock time and date at job start Mon Mar 30 2020 02:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46847 * 111.00011 * 2 1 4 4 C 1.53032 * 109.52369 * 174.15963 * 3 2 1 5 5 C 1.53131 * 109.30896 * 59.16020 * 4 3 2 6 6 H 1.09007 * 109.48553 * 62.29153 * 5 4 3 7 7 C 1.52999 * 109.55646 * 182.47812 * 5 4 3 8 8 C 1.50701 * 109.47297 * 294.70357 * 7 5 4 9 9 H 1.07998 * 119.99786 * 0.02562 * 8 7 5 10 10 C 1.37881 * 119.99908 * 180.02562 * 8 7 5 11 11 N 1.31518 * 119.99484 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00083 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47403 * 90.00107 * 12 10 8 14 14 H 1.48495 * 109.46984 * 210.00367 * 12 10 8 15 15 H 1.48505 * 109.46845 * 329.99805 * 12 10 8 16 16 C 1.53114 * 109.15909 * 302.40527 * 5 4 3 17 17 H 1.09002 * 109.50377 * 177.55510 * 16 5 4 18 18 O 1.42896 * 109.50301 * 297.63485 * 16 5 4 19 19 C 1.46851 * 110.99895 * 235.79210 * 2 1 3 20 20 H 1.09005 * 109.47226 * 184.21236 * 1 2 3 21 21 H 1.09010 * 109.46874 * 304.20444 * 1 2 3 22 22 H 1.08989 * 109.47420 * 64.20404 * 1 2 3 23 23 H 1.08997 * 109.46740 * 294.18082 * 3 2 1 24 24 H 1.09001 * 109.46137 * 54.14976 * 3 2 1 25 25 H 1.09005 * 109.50615 * 179.12035 * 4 3 2 26 26 H 1.09002 * 109.50935 * 299.20472 * 4 3 2 27 27 H 1.08994 * 109.46917 * 54.70529 * 7 5 4 28 28 H 1.09000 * 109.46830 * 174.70350 * 7 5 4 29 29 H 0.97006 * 119.99419 * 179.97438 * 11 10 8 30 30 H 0.96704 * 114.00398 * 179.97438 * 18 16 5 31 31 H 1.09000 * 109.46176 * 65.82371 * 19 2 1 32 32 H 1.09000 * 109.45887 * 305.85355 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1195 0.5366 -1.0139 6 1 3.8900 1.0356 -1.9554 7 6 5.6367 0.4438 -0.8395 8 6 6.2408 1.8195 -0.9555 9 1 5.6061 2.6746 -1.1351 10 6 7.6039 1.9865 -0.8323 11 7 8.1311 3.1871 -0.9340 12 14 8.7017 0.5076 -0.5209 13 1 9.1397 -0.0659 -1.8188 14 1 9.8917 0.9302 0.2603 15 1 7.9463 -0.5174 0.2435 16 6 3.5181 -0.8714 -1.0209 17 1 3.9099 -1.4302 -1.8709 18 8 3.8632 -1.5437 0.1919 19 6 1.9952 -0.7708 -1.1338 20 1 -0.3634 -1.0249 0.0755 21 1 -0.3633 0.5778 0.8500 22 1 -0.3633 0.4472 -0.9251 23 1 1.7324 1.8609 -0.9375 24 1 1.5635 1.9257 0.8330 25 1 3.9099 2.3513 0.1310 26 1 3.7814 0.8573 1.0909 27 1 5.8649 0.0283 0.1419 28 1 6.0524 -0.2020 -1.6130 29 1 9.0901 3.3046 -0.8469 30 1 3.5142 -2.4433 0.2561 31 1 1.7324 -0.2708 -2.0660 32 1 1.5634 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259721666.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:09 Heat of formation + Delta-G solvation = -56.722329 kcal Electronic energy + Delta-G solvation = -13411.214974 eV Core-core repulsion = 11178.261340 eV Total energy + Delta-G solvation = -2232.953633 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.09911 -35.54909 -34.00930 -31.98723 -29.62015 -28.78254 -25.65091 -23.03671 -22.42359 -20.51949 -18.98360 -16.78212 -16.42273 -15.49007 -14.69826 -14.54989 -14.16331 -13.71462 -12.99987 -12.76447 -12.53994 -12.45075 -11.86076 -11.77311 -11.46294 -11.21328 -10.80153 -10.61090 -10.13624 -9.85040 -9.62656 -9.43240 -9.14259 -8.93326 -8.44401 -8.07509 -5.96366 -3.92753 3.37761 3.45213 3.53803 4.10517 4.54512 4.88415 5.06470 5.19898 5.35916 5.37835 5.45746 5.62662 5.67918 5.75949 5.85728 5.90846 5.97679 6.09023 6.41928 6.49100 6.77867 6.98283 7.17998 7.26033 7.34977 7.38747 7.66037 7.89481 8.21107 8.62320 9.08545 9.67500 11.17022 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.056427 B = 0.009752 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.100688 B = 2870.480773 C = 3189.069118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.532 5.532 3 C 0.055 3.945 4 C -0.098 4.098 5 C -0.066 4.066 6 H 0.067 0.933 7 C -0.003 4.003 8 C -0.515 4.515 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.907 5.907 12 Si 0.877 3.123 13 H -0.280 1.280 14 H -0.289 1.289 15 H -0.262 1.262 16 C 0.109 3.891 17 H 0.051 0.949 18 O -0.542 6.542 19 C 0.025 3.975 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.019 0.981 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.006 0.994 29 H 0.261 0.739 30 H 0.361 0.639 31 H 0.036 0.964 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 -8.315 0.293 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.257 5.257 3 C -0.073 4.073 4 C -0.136 4.136 5 C -0.085 4.085 6 H 0.085 0.915 7 C -0.040 4.040 8 C -0.553 4.553 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.547 5.547 12 Si 0.705 3.295 13 H -0.206 1.206 14 H -0.216 1.216 15 H -0.186 1.186 16 C 0.050 3.950 17 H 0.069 0.931 18 O -0.345 6.345 19 C -0.103 4.103 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.037 0.963 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.206 0.794 31 H 0.055 0.945 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.336 -7.862 0.850 14.654 hybrid contribution 0.021 -0.800 -0.856 1.172 sum -12.315 -8.662 -0.005 15.057 Atomic orbital electron populations 1.22353 0.88333 1.01564 1.00068 1.61866 1.06330 1.14635 1.42866 1.22236 0.97651 0.87841 0.99547 1.21489 0.91025 1.01386 0.99669 1.21110 0.98188 0.90964 0.98197 0.91485 1.19513 0.90239 0.97331 0.96949 1.21191 0.92579 0.92870 1.48619 0.91041 1.25015 0.98186 0.95557 0.94813 1.69926 1.11889 1.21568 1.51298 0.86800 0.80169 0.83909 0.78622 1.20561 1.21567 1.18649 1.22017 0.90923 0.95413 0.86640 0.93131 1.86668 1.77582 1.30311 1.39940 1.22853 0.97571 0.97932 0.91968 0.91918 0.91602 0.96252 0.95535 0.91358 0.90478 0.90990 0.95409 0.97573 0.92915 0.79430 0.94536 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.59 60.06 0.58 0.87 16 2 N -0.53 -7.93 4.79 -242.96 -1.16 -9.10 16 3 C 0.05 0.88 5.46 -3.84 -0.02 0.86 16 4 C -0.10 -1.93 4.99 -26.65 -0.13 -2.06 16 5 C -0.07 -1.35 2.04 -90.49 -0.18 -1.54 16 6 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 7 C 0.00 -0.07 3.27 -27.88 -0.09 -0.17 16 8 C -0.51 -14.85 9.00 -34.44 -0.31 -15.16 16 9 H 0.07 2.19 7.32 -52.49 -0.38 1.80 16 10 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 11 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 12 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 16 C 0.11 1.85 3.27 -26.65 -0.09 1.76 16 17 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 18 O -0.54 -9.39 11.99 -35.23 -0.42 -9.82 16 19 C 0.03 0.36 5.13 -3.83 -0.02 0.34 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.07 0.72 8.09 -51.92 -0.42 0.30 16 22 H 0.02 0.21 8.14 -51.94 -0.42 -0.21 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 25 H 0.08 1.64 7.06 -51.93 -0.37 1.28 16 26 H 0.07 1.53 7.80 -51.93 -0.41 1.12 16 27 H 0.03 0.73 6.85 -51.93 -0.36 0.37 16 28 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.36 4.48 9.08 45.56 0.41 4.89 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 LS Contribution 254.33 15.07 3.83 3.83 Total: -1.00 -32.23 254.33 -6.47 -38.70 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.46 Total: -0.51 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.37 Total: -13.27 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.39 Total: -36.80 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.42 Total: -9.82 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.23 -6.47 -38.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721666.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.019 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds