Wall clock time and date at job start Mon Mar 30 2020 02:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46847 * 111.00011 * 2 1 4 4 C 1.53032 * 109.52369 * 174.15963 * 3 2 1 5 5 C 1.53131 * 109.30896 * 59.16020 * 4 3 2 6 6 H 1.09007 * 109.48553 * 62.29153 * 5 4 3 7 7 C 1.52999 * 109.55646 * 182.47812 * 5 4 3 8 8 C 1.50701 * 109.47297 * 294.70357 * 7 5 4 9 9 H 1.07998 * 119.99786 * 0.02562 * 8 7 5 10 10 C 1.37881 * 119.99908 * 180.02562 * 8 7 5 11 11 N 1.31518 * 119.99484 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00083 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47403 * 90.00107 * 12 10 8 14 14 H 1.48495 * 109.46984 * 210.00367 * 12 10 8 15 15 H 1.48505 * 109.46845 * 329.99805 * 12 10 8 16 16 C 1.53114 * 109.15909 * 302.40527 * 5 4 3 17 17 H 1.09002 * 109.50377 * 177.55510 * 16 5 4 18 18 O 1.42896 * 109.50301 * 297.63485 * 16 5 4 19 19 C 1.46851 * 110.99895 * 235.79210 * 2 1 3 20 20 H 1.09005 * 109.47226 * 184.21236 * 1 2 3 21 21 H 1.09010 * 109.46874 * 304.20444 * 1 2 3 22 22 H 1.08989 * 109.47420 * 64.20404 * 1 2 3 23 23 H 1.08997 * 109.46740 * 294.18082 * 3 2 1 24 24 H 1.09001 * 109.46137 * 54.14976 * 3 2 1 25 25 H 1.09005 * 109.50615 * 179.12035 * 4 3 2 26 26 H 1.09002 * 109.50935 * 299.20472 * 4 3 2 27 27 H 1.08994 * 109.46917 * 54.70529 * 7 5 4 28 28 H 1.09000 * 109.46830 * 174.70350 * 7 5 4 29 29 H 0.97006 * 119.99419 * 179.97438 * 11 10 8 30 30 H 0.96704 * 114.00398 * 179.97438 * 18 16 5 31 31 H 1.09000 * 109.46176 * 65.82371 * 19 2 1 32 32 H 1.09000 * 109.45887 * 305.85355 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1195 0.5366 -1.0139 6 1 3.8900 1.0356 -1.9554 7 6 5.6367 0.4438 -0.8395 8 6 6.2408 1.8195 -0.9555 9 1 5.6061 2.6746 -1.1351 10 6 7.6039 1.9865 -0.8323 11 7 8.1311 3.1871 -0.9340 12 14 8.7017 0.5076 -0.5209 13 1 9.1397 -0.0659 -1.8188 14 1 9.8917 0.9302 0.2603 15 1 7.9463 -0.5174 0.2435 16 6 3.5181 -0.8714 -1.0209 17 1 3.9099 -1.4302 -1.8709 18 8 3.8632 -1.5437 0.1919 19 6 1.9952 -0.7708 -1.1338 20 1 -0.3634 -1.0249 0.0755 21 1 -0.3633 0.5778 0.8500 22 1 -0.3633 0.4472 -0.9251 23 1 1.7324 1.8609 -0.9375 24 1 1.5635 1.9257 0.8330 25 1 3.9099 2.3513 0.1310 26 1 3.7814 0.8573 1.0909 27 1 5.8649 0.0283 0.1419 28 1 6.0524 -0.2020 -1.6130 29 1 9.0901 3.3046 -0.8469 30 1 3.5142 -2.4433 0.2561 31 1 1.7324 -0.2708 -2.0660 32 1 1.5634 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259721666.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:09 Heat of formation + Delta-G solvation = -82.144651 kcal Electronic energy + Delta-G solvation = -13412.317368 eV Core-core repulsion = 11178.261340 eV Total energy + Delta-G solvation = -2234.056028 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.42040 -36.79107 -35.80201 -34.00707 -31.01162 -30.37539 -27.15425 -24.56610 -23.82525 -22.14392 -20.51349 -18.90877 -17.78581 -16.79280 -16.30294 -15.83071 -15.70800 -15.19671 -14.74781 -14.42543 -14.08341 -13.79001 -13.48133 -13.06664 -12.89276 -12.60026 -12.53379 -12.27411 -11.89977 -11.72173 -11.42498 -11.22919 -10.81589 -10.70830 -10.54023 -9.18706 -8.27266 -6.28914 1.33669 1.37000 1.50837 2.37784 2.99913 3.08346 3.64618 3.90716 3.92229 4.12173 4.21937 4.47180 4.54868 4.59592 4.64553 4.74303 4.80005 4.90351 4.96128 5.03630 5.14350 5.27434 5.41863 5.44427 5.68378 5.76819 6.13786 6.22108 6.32478 6.77613 7.16199 7.35019 8.89315 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.056427 B = 0.009752 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.100688 B = 2870.480773 C = 3189.069118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.064 3.936 4 C -0.092 4.092 5 C -0.070 4.070 6 H 0.061 0.939 7 C 0.005 3.995 8 C -0.521 4.521 9 H 0.036 0.964 10 C 0.003 3.997 11 N -0.952 5.952 12 Si 0.947 3.053 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.254 1.254 16 C 0.114 3.886 17 H 0.064 0.936 18 O -0.565 6.565 19 C 0.031 3.969 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.026 0.974 23 H 0.029 0.971 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.014 0.986 28 H 0.010 0.990 29 H 0.265 0.735 30 H 0.384 0.616 31 H 0.041 0.959 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 -10.705 0.206 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.064 4.064 4 C -0.130 4.130 5 C -0.089 4.089 6 H 0.079 0.921 7 C -0.033 4.033 8 C -0.559 4.559 9 H 0.054 0.946 10 C -0.193 4.193 11 N -0.594 5.594 12 Si 0.771 3.229 13 H -0.190 1.190 14 H -0.210 1.210 15 H -0.178 1.178 16 C 0.054 3.946 17 H 0.082 0.918 18 O -0.371 6.371 19 C -0.097 4.097 20 H 0.100 0.900 21 H 0.090 0.910 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.232 0.768 31 H 0.059 0.941 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.676 -10.276 0.759 17.123 hybrid contribution 0.388 0.005 -0.817 0.904 sum -13.288 -10.270 -0.058 16.794 Atomic orbital electron populations 1.22420 0.85943 1.03072 1.00726 1.61834 1.08453 1.13337 1.43444 1.22051 0.94717 0.89438 1.00207 1.21324 0.94083 0.99075 0.98503 1.21057 0.95534 0.94237 0.98054 0.92065 1.19393 0.93334 0.94482 0.96057 1.21506 0.92553 0.93990 1.47819 0.94569 1.25961 0.99956 0.98681 0.94722 1.70071 1.12478 1.23985 1.52833 0.85702 0.78030 0.80048 0.79152 1.19043 1.20966 1.17779 1.21871 0.92810 0.92838 0.87042 0.91780 1.86603 1.78284 1.32165 1.40063 1.22817 0.95371 0.99652 0.91894 0.89990 0.90988 0.95559 0.95271 0.90201 0.93704 0.92868 0.96725 0.97161 0.92657 0.76784 0.94098 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.59 127.69 1.22 1.74 16 2 N -0.55 -14.67 4.79 -922.59 -4.42 -19.10 16 3 C 0.06 1.98 5.46 86.32 0.47 2.45 16 4 C -0.09 -3.69 4.99 30.65 0.15 -3.53 16 5 C -0.07 -2.87 2.04 -10.71 -0.02 -2.89 16 6 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 7 C 0.00 0.24 3.27 29.85 0.10 0.33 16 8 C -0.52 -31.02 9.00 25.60 0.23 -30.79 16 9 H 0.04 2.34 7.32 -2.91 -0.02 2.32 16 10 C 0.00 0.18 5.47 84.66 0.46 0.64 16 11 N -0.95 -61.38 13.96 21.45 0.30 -61.08 16 12 Si 0.95 46.63 27.47 68.60 1.88 48.52 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 14 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 15 H -0.25 -12.08 6.54 99.48 0.65 -11.42 16 16 C 0.11 3.57 3.27 30.64 0.10 3.67 16 17 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 18 O -0.56 -18.21 11.99 -148.98 -1.79 -19.99 16 19 C 0.03 0.77 5.13 86.32 0.44 1.21 16 20 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 21 H 0.07 1.33 8.09 -2.38 -0.02 1.31 16 22 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 25 H 0.04 2.02 7.06 -2.38 -0.02 2.01 16 26 H 0.05 2.29 7.80 -2.39 -0.02 2.28 16 27 H 0.01 0.76 6.85 -2.39 -0.02 0.74 16 28 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 29 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 30 H 0.38 8.23 9.08 -74.05 -0.67 7.56 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.90 8.12 -2.39 -0.02 1.88 16 Total: -1.00 -70.44 254.33 -0.51 -70.95 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.36 Total: 7.86 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 3.16 Total: -27.17 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -4.12 Total: -80.18 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -1.79 Total: -19.99 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.88 Total: 48.52 kcal Total: -70.44 -0.51 -70.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721666.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.193 kcal (2) G-P(sol) polarization free energy of solvation -70.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds