Wall clock time and date at job start Mon Mar 30 2020 02:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00493 * 2 1 4 4 C 1.46900 * 110.99846 * 123.95547 * 2 1 3 5 5 H 1.09003 * 109.54534 * 185.89083 * 4 2 1 6 6 C 1.53176 * 109.54592 * 306.16164 * 4 2 1 7 7 C 1.53090 * 109.16749 * 176.84535 * 6 4 2 8 8 O 1.42900 * 109.41744 * 302.39171 * 7 6 4 9 9 C 1.42906 * 114.09636 * 61.15626 * 8 7 6 10 10 C 1.53098 * 109.41614 * 298.84251 * 9 8 7 11 11 H 1.09002 * 109.57415 * 297.67633 * 10 9 8 12 12 C 1.50693 * 109.52546 * 177.51389 * 10 9 8 13 13 H 1.08000 * 120.00548 * 245.61566 * 12 10 9 14 14 C 1.37881 * 119.99747 * 65.61114 * 12 10 9 15 15 N 1.31511 * 120.00323 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99701 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47545 * 60.00034 * 16 14 12 18 18 H 1.48500 * 109.46908 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47187 * 299.99348 * 16 14 12 20 20 H 1.09004 * 109.47184 * 300.00394 * 1 2 3 21 21 H 1.09006 * 109.47231 * 59.99642 * 1 2 3 22 22 H 1.08999 * 109.47921 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47084 * 178.29577 * 3 2 1 24 24 H 1.08995 * 109.47118 * 298.29621 * 3 2 1 25 25 H 1.08998 * 109.47158 * 58.29598 * 3 2 1 26 26 H 1.08999 * 109.52373 * 296.75590 * 6 4 2 27 27 H 1.09000 * 109.52068 * 56.87404 * 6 4 2 28 28 H 1.09008 * 109.47570 * 62.37496 * 7 6 4 29 29 H 1.08997 * 109.48017 * 182.40374 * 7 6 4 30 30 H 1.08999 * 109.48396 * 178.86055 * 9 8 7 31 31 H 1.08998 * 109.48103 * 58.82633 * 9 8 7 32 32 H 0.97003 * 120.00200 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 3.0800 -0.6642 1.1751 6 6 1.3838 -0.2371 2.4385 7 6 1.8768 -1.0912 3.6094 8 8 1.5267 -2.4577 3.3811 9 6 2.1086 -3.0202 2.2033 10 6 1.6248 -2.2435 0.9759 11 1 0.5428 -2.3399 0.8859 12 6 2.2842 -2.7956 -0.2616 13 1 2.9731 -2.1838 -0.8251 14 6 2.0081 -4.0818 -0.6744 15 7 1.1696 -4.8271 0.0121 16 14 2.8261 -4.7664 -2.2079 17 1 4.3003 -4.7556 -2.0295 18 1 2.3656 -6.1599 -2.4344 19 1 2.4630 -3.9282 -3.3788 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3635 -1.0276 -0.0005 23 1 3.0847 1.3423 0.0306 24 1 1.6710 1.8851 -0.9048 25 1 1.6216 1.9041 0.8743 26 1 1.6884 0.7986 2.5895 27 1 0.2968 -0.2919 2.3787 28 1 2.9601 -1.0026 3.6931 29 1 1.4113 -0.7460 4.5325 30 1 1.8099 -4.0646 2.1135 31 1 3.1947 -2.9569 2.2687 32 1 0.9751 -5.7319 -0.2786 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259782643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:46 Heat of formation + Delta-G solvation = -43.464793 kcal Electronic energy + Delta-G solvation = -13795.426288 eV Core-core repulsion = 11563.047544 eV Total energy + Delta-G solvation = -2232.378744 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.94881 -36.12974 -33.17511 -30.82435 -29.75580 -27.04366 -25.06391 -24.51596 -22.11143 -21.22957 -18.59075 -16.41571 -15.52265 -15.13085 -14.67530 -14.41533 -13.93137 -13.69007 -13.33252 -12.78014 -12.50428 -12.02412 -11.46657 -11.29666 -11.07420 -10.88706 -10.85064 -10.48016 -10.31960 -10.21795 -10.00525 -9.16344 -8.92783 -8.52733 -8.23186 -7.43312 -5.95238 -3.95787 3.37945 3.42150 3.45832 4.49260 4.69495 4.90268 5.38587 5.45015 5.61791 5.71886 5.75827 5.81398 5.91362 6.04854 6.11093 6.23162 6.26489 6.39209 6.57969 6.64939 6.71897 6.83152 7.06521 7.54091 7.66503 7.84494 7.94109 8.06735 8.21017 8.58181 9.08192 9.66620 11.13869 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032287 B = 0.014454 C = 0.011195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.004286 B = 1936.677380 C = 2500.450067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.519 5.519 3 C 0.024 3.976 4 C 0.092 3.908 5 H 0.067 0.933 6 C -0.190 4.190 7 C 0.071 3.929 8 O -0.400 6.400 9 C 0.065 3.935 10 C 0.029 3.971 11 H 0.042 0.958 12 C -0.488 4.488 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.893 3.107 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.278 1.278 20 H 0.016 0.984 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.015 0.985 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.025 0.975 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 8.331 2.950 8.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.241 5.241 3 C -0.125 4.125 4 C -0.016 4.016 5 H 0.085 0.915 6 C -0.229 4.229 7 C -0.007 4.007 8 O -0.319 6.319 9 C -0.011 4.011 10 C 0.010 3.990 11 H 0.060 0.940 12 C -0.526 4.526 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.539 5.539 16 Si 0.721 3.279 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.203 1.203 20 H 0.034 0.966 21 H 0.072 0.928 22 H 0.099 0.901 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.043 0.957 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.633 7.814 2.601 8.260 hybrid contribution 0.321 0.242 -0.338 0.525 sum 0.954 8.056 2.263 8.422 Atomic orbital electron populations 1.22383 0.88296 1.02895 0.98609 1.62075 1.07414 1.11261 1.43311 1.22366 1.00181 0.90512 0.99394 1.21958 0.97831 0.96683 0.85137 0.91465 1.22941 1.02241 0.98927 0.98797 1.22253 0.98034 0.83893 0.96549 1.87860 1.73630 1.23865 1.46565 1.23098 0.94822 1.00385 0.82830 1.19329 0.98261 0.87380 0.94028 0.94038 1.20957 1.25609 0.97445 1.08608 0.92060 1.25003 0.95282 0.97226 0.96909 1.69887 1.35177 1.09308 1.39483 0.86640 0.79662 0.77736 0.83828 1.20458 1.21567 1.20317 0.96592 0.92783 0.90131 0.92127 0.92340 0.96696 0.92818 0.91264 0.94449 0.90746 0.86765 0.95668 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 8.72 60.06 0.52 1.01 16 2 N -0.52 -10.28 4.65 -242.96 -1.13 -11.41 16 3 C 0.02 0.39 9.29 60.06 0.56 0.94 16 4 C 0.09 1.93 1.64 -67.53 -0.11 1.81 16 5 H 0.07 1.43 8.00 -51.93 -0.42 1.02 16 6 C -0.19 -3.43 4.70 -26.59 -0.12 -3.56 16 7 C 0.07 1.29 6.84 37.20 0.25 1.54 16 8 O -0.40 -8.98 10.77 -35.23 -0.38 -9.36 16 9 C 0.06 1.58 5.93 37.21 0.22 1.80 16 10 C 0.03 0.72 1.56 -91.63 -0.14 0.57 16 11 H 0.04 1.14 6.34 -51.93 -0.33 0.82 16 12 C -0.49 -13.25 8.19 -34.44 -0.28 -13.53 16 13 H 0.06 1.69 7.75 -52.49 -0.41 1.28 16 14 C 0.06 1.55 5.33 -17.82 -0.10 1.45 16 15 N -0.90 -25.73 11.77 55.43 0.65 -25.07 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H 0.02 0.27 6.39 -51.93 -0.33 -0.06 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.08 1.70 6.24 -51.93 -0.32 1.37 16 23 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.01 0.22 6.95 -51.93 -0.36 -0.14 16 26 H 0.05 0.85 6.97 -51.93 -0.36 0.49 16 27 H 0.07 1.30 6.24 -51.93 -0.32 0.97 16 28 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.11 3.08 6.59 -51.93 -0.34 2.74 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 248.76 15.07 3.75 3.75 Total: -1.00 -28.60 248.76 -6.19 -34.79 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -4.86 Total: -1.26 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 0.80 Total: -7.95 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.48 Total: -36.49 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.38 Total: -9.36 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.60 -6.19 -34.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259782643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.672 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds