Wall clock time and date at job start Mon Mar 30 2020 02:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00493 * 2 1 4 4 C 1.46900 * 110.99846 * 123.95547 * 2 1 3 5 5 H 1.09003 * 109.54534 * 185.89083 * 4 2 1 6 6 C 1.53176 * 109.54592 * 306.16164 * 4 2 1 7 7 C 1.53090 * 109.16749 * 176.84535 * 6 4 2 8 8 O 1.42900 * 109.41744 * 302.39171 * 7 6 4 9 9 C 1.42906 * 114.09636 * 61.15626 * 8 7 6 10 10 C 1.53098 * 109.41614 * 298.84251 * 9 8 7 11 11 H 1.09002 * 109.57415 * 297.67633 * 10 9 8 12 12 C 1.50693 * 109.52546 * 177.51389 * 10 9 8 13 13 H 1.08000 * 120.00548 * 245.61566 * 12 10 9 14 14 C 1.37881 * 119.99747 * 65.61114 * 12 10 9 15 15 N 1.31511 * 120.00323 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99701 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47545 * 60.00034 * 16 14 12 18 18 H 1.48500 * 109.46908 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47187 * 299.99348 * 16 14 12 20 20 H 1.09004 * 109.47184 * 300.00394 * 1 2 3 21 21 H 1.09006 * 109.47231 * 59.99642 * 1 2 3 22 22 H 1.08999 * 109.47921 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47084 * 178.29577 * 3 2 1 24 24 H 1.08995 * 109.47118 * 298.29621 * 3 2 1 25 25 H 1.08998 * 109.47158 * 58.29598 * 3 2 1 26 26 H 1.08999 * 109.52373 * 296.75590 * 6 4 2 27 27 H 1.09000 * 109.52068 * 56.87404 * 6 4 2 28 28 H 1.09008 * 109.47570 * 62.37496 * 7 6 4 29 29 H 1.08997 * 109.48017 * 182.40374 * 7 6 4 30 30 H 1.08999 * 109.48396 * 178.86055 * 9 8 7 31 31 H 1.08998 * 109.48103 * 58.82633 * 9 8 7 32 32 H 0.97003 * 120.00200 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 3.0800 -0.6642 1.1751 6 6 1.3838 -0.2371 2.4385 7 6 1.8768 -1.0912 3.6094 8 8 1.5267 -2.4577 3.3811 9 6 2.1086 -3.0202 2.2033 10 6 1.6248 -2.2435 0.9759 11 1 0.5428 -2.3399 0.8859 12 6 2.2842 -2.7956 -0.2616 13 1 2.9731 -2.1838 -0.8251 14 6 2.0081 -4.0818 -0.6744 15 7 1.1696 -4.8271 0.0121 16 14 2.8261 -4.7664 -2.2079 17 1 4.3003 -4.7556 -2.0295 18 1 2.3656 -6.1599 -2.4344 19 1 2.4630 -3.9282 -3.3788 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3635 -1.0276 -0.0005 23 1 3.0847 1.3423 0.0306 24 1 1.6710 1.8851 -0.9048 25 1 1.6216 1.9041 0.8743 26 1 1.6884 0.7986 2.5895 27 1 0.2968 -0.2919 2.3787 28 1 2.9601 -1.0026 3.6931 29 1 1.4113 -0.7460 4.5325 30 1 1.8099 -4.0646 2.1135 31 1 3.1947 -2.9569 2.2687 32 1 0.9751 -5.7319 -0.2786 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259782643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:46 Heat of formation + Delta-G solvation = -63.474602 kcal Electronic energy + Delta-G solvation = -13796.293978 eV Core-core repulsion = 11563.047544 eV Total energy + Delta-G solvation = -2233.246434 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.60010 -37.72230 -35.19242 -32.44237 -31.59075 -28.42256 -26.99518 -26.17785 -23.73976 -22.92189 -20.26844 -18.45081 -17.17689 -16.84100 -16.47816 -16.07575 -15.49942 -15.24070 -14.95834 -14.41963 -14.14799 -13.85202 -12.95778 -12.74861 -12.72514 -12.61489 -12.52304 -12.25049 -12.18006 -11.89633 -11.77774 -11.03314 -10.82884 -10.45407 -10.17254 -8.89730 -8.05982 -6.13193 1.44660 1.45946 1.53527 2.47970 3.16393 3.20246 3.39536 3.98197 4.09289 4.25814 4.40732 4.46278 4.52306 4.63845 4.67289 4.76720 4.80682 4.94862 5.04253 5.05925 5.08503 5.15788 5.26415 5.60614 5.74457 5.91744 6.23087 6.38459 6.49275 6.64400 6.96924 7.52348 9.01823 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032287 B = 0.014454 C = 0.011195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.004286 B = 1936.677380 C = 2500.450067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.547 5.547 3 C 0.026 3.974 4 C 0.098 3.902 5 H 0.063 0.937 6 C -0.179 4.179 7 C 0.061 3.939 8 O -0.416 6.416 9 C 0.077 3.923 10 C 0.030 3.970 11 H 0.006 0.994 12 C -0.497 4.497 13 H 0.054 0.946 14 C 0.008 3.992 15 N -0.927 5.927 16 Si 0.952 3.048 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.276 1.276 20 H 0.033 0.967 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.027 0.973 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 10.160 3.063 10.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.269 5.269 3 C -0.121 4.121 4 C -0.011 4.011 5 H 0.081 0.919 6 C -0.219 4.219 7 C -0.016 4.016 8 O -0.336 6.336 9 C 0.000 4.000 10 C 0.011 3.989 11 H 0.024 0.976 12 C -0.535 4.535 13 H 0.073 0.927 14 C -0.189 4.189 15 N -0.568 5.568 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.201 1.201 20 H 0.052 0.948 21 H 0.091 0.909 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.314 9.666 2.719 10.127 hybrid contribution 0.093 -0.265 -0.344 0.444 sum 1.407 9.401 2.375 9.798 Atomic orbital electron populations 1.22279 0.87891 1.00973 1.00367 1.61974 1.08037 1.13722 1.43209 1.22407 1.00378 0.88357 1.00999 1.21720 0.97719 0.94392 0.87256 0.91855 1.22829 1.01479 1.00538 0.97015 1.22613 0.99457 0.81504 0.97997 1.87815 1.73831 1.26606 1.45362 1.22693 0.94677 0.98856 0.83725 1.19209 0.95727 0.90581 0.93370 0.97619 1.21207 1.25343 0.97512 1.09435 0.92737 1.25729 0.95897 0.97673 0.99635 1.70026 1.36435 1.09433 1.40896 0.85696 0.79038 0.76960 0.80424 1.19591 1.21380 1.20115 0.94822 0.90921 0.93888 0.91724 0.90837 0.94869 0.89500 0.92083 0.92993 0.87385 0.90186 0.95436 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 8.72 127.69 1.11 2.30 16 2 N -0.55 -20.82 4.65 -922.57 -4.29 -25.10 16 3 C 0.03 0.75 9.29 127.69 1.19 1.94 16 4 C 0.10 3.97 1.64 45.04 0.07 4.04 16 5 H 0.06 2.60 8.00 -2.39 -0.02 2.58 16 6 C -0.18 -6.02 4.70 30.68 0.14 -5.88 16 7 C 0.06 2.07 6.84 72.01 0.49 2.56 16 8 O -0.42 -18.53 10.77 -148.98 -1.60 -20.13 16 9 C 0.08 3.84 5.93 72.02 0.43 4.26 16 10 C 0.03 1.52 1.56 -11.45 -0.02 1.50 16 11 H 0.01 0.33 6.34 -2.39 -0.02 0.31 16 12 C -0.50 -27.38 8.19 25.60 0.21 -27.17 16 13 H 0.05 3.02 7.75 -2.91 -0.02 2.99 16 14 C 0.01 0.45 5.33 84.66 0.45 0.90 16 15 N -0.93 -54.62 11.77 21.45 0.25 -54.36 16 16 Si 0.95 44.58 29.54 68.60 2.03 46.60 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H 0.03 1.07 6.39 -2.38 -0.02 1.05 16 21 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 22 H 0.04 1.85 6.24 -2.39 -0.01 1.83 16 23 H 0.06 1.78 8.02 -2.39 -0.02 1.76 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.03 0.83 6.95 -2.39 -0.02 0.81 16 26 H 0.09 2.37 6.97 -2.39 -0.02 2.36 16 27 H 0.06 2.16 6.24 -2.39 -0.01 2.15 16 28 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.08 4.49 6.59 -2.39 -0.02 4.48 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -62.08 248.76 1.55 -60.53 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.08 Total: 8.01 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 4.08 Total: -15.54 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -4.03 Total: -79.47 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.60 Total: -20.13 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -62.08 1.55 -60.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259782643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.949 kcal (2) G-P(sol) polarization free energy of solvation -62.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds