Wall clock time and date at job start Mon Mar 30 2020 02:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08995 * 109.49846 * 330.00148 * 3 2 1 5 5 C 1.53037 * 109.50261 * 90.07803 * 3 2 1 6 6 N 1.46845 * 109.52176 * 179.12022 * 5 3 2 7 7 C 1.46895 * 110.99703 * 174.16387 * 6 5 3 8 8 C 1.46850 * 111.19772 * 298.25953 * 6 5 3 9 9 C 1.53037 * 109.52320 * 61.74569 * 8 6 5 10 10 C 1.53120 * 109.30732 * 300.83627 * 9 8 6 11 11 H 1.09004 * 109.49893 * 297.71175 * 10 9 8 12 12 C 1.50702 * 109.55541 * 177.51963 * 10 9 8 13 13 H 1.08005 * 120.00271 * 240.30190 * 12 10 9 14 14 C 1.37873 * 119.99812 * 60.30301 * 12 10 9 15 15 N 1.31516 * 120.00143 * 359.97438 * 14 12 10 16 16 Si 1.86808 * 120.00015 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46968 * 59.99339 * 16 14 12 18 18 H 1.48496 * 109.47019 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46828 * 299.99732 * 16 14 12 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 23 23 H 1.09001 * 109.46424 * 299.14027 * 5 3 2 24 24 H 1.08996 * 109.45866 * 59.10650 * 5 3 2 25 25 H 1.08995 * 109.47578 * 59.99850 * 7 6 5 26 26 H 1.09008 * 109.47054 * 180.02562 * 7 6 5 27 27 H 1.09003 * 109.47611 * 299.99644 * 7 6 5 28 28 H 1.09002 * 109.45739 * 181.75820 * 8 6 5 29 29 H 1.09001 * 109.46493 * 301.72344 * 8 6 5 30 30 H 1.09004 * 109.50513 * 60.75702 * 9 8 6 31 31 H 1.09002 * 109.50372 * 180.84281 * 9 8 6 32 32 H 0.96997 * 119.99769 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3455 1.9997 -0.5137 5 6 2.2199 1.7714 1.4426 6 7 2.8366 3.1041 1.4431 7 6 2.9263 3.6420 2.8070 8 6 4.1564 3.0787 0.7996 9 6 4.0045 2.6518 -0.6622 10 6 3.3611 1.2636 -0.7200 11 1 4.0126 0.5399 -0.2302 12 6 3.1530 0.8635 -2.1580 13 1 2.1573 0.6592 -2.5231 14 6 4.2339 0.7583 -3.0075 15 7 5.4463 1.0075 -2.5630 16 14 3.9760 0.2630 -4.7902 17 1 3.0914 1.2527 -5.4558 18 1 5.2865 0.2233 -5.4873 19 1 3.3450 -1.0801 -4.8444 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 1.2580 1.8161 1.9532 24 1 2.8732 1.0687 1.9598 25 1 3.5324 2.9762 3.4212 26 1 3.3863 4.6299 2.7785 27 1 1.9261 3.7196 3.2336 28 1 4.6008 4.0730 0.8433 29 1 4.8006 2.3699 1.3199 30 1 3.3715 3.3678 -1.1865 31 1 4.9859 2.6187 -1.1355 32 1 6.2066 0.9338 -3.1608 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259842970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:18 Heat of formation + Delta-G solvation = -47.165333 kcal Electronic energy + Delta-G solvation = -13571.545885 eV Core-core repulsion = 11339.006674 eV Total energy + Delta-G solvation = -2232.539211 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.61333 -36.22693 -33.63956 -30.98818 -29.26431 -26.89651 -25.92749 -24.03187 -21.78932 -21.30870 -18.80981 -16.40645 -15.84258 -14.94035 -14.84173 -14.32151 -14.04694 -13.85774 -13.27366 -12.70405 -12.37331 -11.84723 -11.82404 -11.50216 -11.11119 -10.86192 -10.74122 -10.57950 -10.21178 -10.06033 -9.68716 -9.34423 -8.79083 -8.53752 -8.24125 -7.79303 -5.91917 -3.95027 3.37801 3.41533 3.45070 4.29856 4.50879 4.89975 5.39719 5.50102 5.62672 5.70280 5.78898 5.83112 5.95053 6.06592 6.12357 6.13721 6.19748 6.21354 6.54609 6.60722 6.84323 7.09768 7.29618 7.49583 7.64283 7.79739 7.86711 8.11548 8.30730 8.50537 9.05749 9.67392 11.15067 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.035399 B = 0.012780 C = 0.009846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.790228 B = 2190.349416 C = 2843.161269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.101 3.899 4 H 0.056 0.944 5 C 0.038 3.962 6 N -0.540 5.540 7 C 0.027 3.973 8 C 0.052 3.948 9 C -0.104 4.104 10 C 0.053 3.947 11 H 0.030 0.970 12 C -0.497 4.497 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 H 0.073 0.927 21 H 0.036 0.964 22 H 0.027 0.973 23 H 0.057 0.943 24 H 0.033 0.967 25 H 0.019 0.981 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.025 0.975 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 2.909 6.850 9.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C 0.043 3.957 4 H 0.074 0.926 5 C -0.090 4.090 6 N -0.266 5.266 7 C -0.121 4.121 8 C -0.075 4.075 9 C -0.142 4.142 10 C 0.035 3.965 11 H 0.048 0.952 12 C -0.535 4.535 13 H 0.073 0.927 14 C -0.141 4.141 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 H 0.092 0.908 21 H 0.055 0.945 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.263 3.040 6.504 8.902 hybrid contribution 0.182 -0.574 -0.371 0.707 sum -5.082 2.466 6.133 8.338 Atomic orbital electron populations 1.22650 0.83444 1.01332 0.98967 1.87987 1.17536 1.28783 1.94659 1.22373 0.98096 0.82816 0.92444 0.92619 1.22578 0.98102 0.88988 0.99363 1.61914 1.23900 1.23688 1.17138 1.22317 1.00757 0.99401 0.89671 1.22348 0.87769 0.99358 0.98011 1.21678 1.03982 0.97453 0.91114 1.18787 0.88980 0.93633 0.95134 0.95234 1.21023 0.93241 1.44983 0.94251 0.92719 1.24936 0.95220 0.95504 0.98463 1.69855 0.98207 1.50032 1.35464 0.86664 0.77107 0.79128 0.85122 1.20396 1.21418 1.20364 0.90801 0.94526 0.95415 0.92417 0.94864 0.96279 0.91796 0.92173 0.92226 0.95635 0.93552 0.88144 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.82 101.05 1.09 1.65 16 2 O -0.37 -8.23 10.05 -35.23 -0.35 -8.58 16 3 C 0.10 2.24 2.13 -26.65 -0.06 2.18 16 4 H 0.06 1.26 7.79 -51.93 -0.40 0.85 16 5 C 0.04 0.74 5.08 -3.83 -0.02 0.72 16 6 N -0.54 -10.07 4.91 -242.96 -1.19 -11.26 16 7 C 0.03 0.40 9.59 60.06 0.58 0.97 16 8 C 0.05 1.05 5.47 -3.83 -0.02 1.03 16 9 C -0.10 -2.48 5.12 -26.65 -0.14 -2.61 16 10 C 0.05 1.37 1.89 -91.65 -0.17 1.20 16 11 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 12 C -0.50 -13.99 8.28 -34.44 -0.29 -14.28 16 13 H 0.05 1.55 7.75 -52.48 -0.41 1.14 16 14 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 15 N -0.90 -25.80 11.37 55.43 0.63 -25.17 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 20 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 21 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 22 H 0.03 0.41 7.90 -51.93 -0.41 0.00 16 23 H 0.06 1.00 7.88 -51.93 -0.41 0.59 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.85 8.09 -51.92 -0.42 0.42 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 2.63 6.18 -51.93 -0.32 2.31 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 257.93 15.07 3.89 3.89 Total: -1.00 -29.42 257.93 -6.47 -35.89 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -5.31 Total: -3.93 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 0.88 Total: -7.57 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.56 Total: -36.44 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.35 Total: -8.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.42 -6.47 -35.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259842970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.277 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds