Wall clock time and date at job start Mon Mar 30 2020 02:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08995 * 109.49846 * 330.00148 * 3 2 1 5 5 C 1.53037 * 109.50261 * 90.07803 * 3 2 1 6 6 N 1.46845 * 109.52176 * 179.12022 * 5 3 2 7 7 C 1.46895 * 110.99703 * 174.16387 * 6 5 3 8 8 C 1.46850 * 111.19772 * 298.25953 * 6 5 3 9 9 C 1.53037 * 109.52320 * 61.74569 * 8 6 5 10 10 C 1.53120 * 109.30732 * 300.83627 * 9 8 6 11 11 H 1.09004 * 109.49893 * 297.71175 * 10 9 8 12 12 C 1.50702 * 109.55541 * 177.51963 * 10 9 8 13 13 H 1.08005 * 120.00271 * 240.30190 * 12 10 9 14 14 C 1.37873 * 119.99812 * 60.30301 * 12 10 9 15 15 N 1.31516 * 120.00143 * 359.97438 * 14 12 10 16 16 Si 1.86808 * 120.00015 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46968 * 59.99339 * 16 14 12 18 18 H 1.48496 * 109.47019 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46828 * 299.99732 * 16 14 12 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 23 23 H 1.09001 * 109.46424 * 299.14027 * 5 3 2 24 24 H 1.08996 * 109.45866 * 59.10650 * 5 3 2 25 25 H 1.08995 * 109.47578 * 59.99850 * 7 6 5 26 26 H 1.09008 * 109.47054 * 180.02562 * 7 6 5 27 27 H 1.09003 * 109.47611 * 299.99644 * 7 6 5 28 28 H 1.09002 * 109.45739 * 181.75820 * 8 6 5 29 29 H 1.09001 * 109.46493 * 301.72344 * 8 6 5 30 30 H 1.09004 * 109.50513 * 60.75702 * 9 8 6 31 31 H 1.09002 * 109.50372 * 180.84281 * 9 8 6 32 32 H 0.96997 * 119.99769 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3455 1.9997 -0.5137 5 6 2.2199 1.7714 1.4426 6 7 2.8366 3.1041 1.4431 7 6 2.9263 3.6420 2.8070 8 6 4.1564 3.0787 0.7996 9 6 4.0045 2.6518 -0.6622 10 6 3.3611 1.2636 -0.7200 11 1 4.0126 0.5399 -0.2302 12 6 3.1530 0.8635 -2.1580 13 1 2.1573 0.6592 -2.5231 14 6 4.2339 0.7583 -3.0075 15 7 5.4463 1.0075 -2.5630 16 14 3.9760 0.2630 -4.7902 17 1 3.0914 1.2527 -5.4558 18 1 5.2865 0.2233 -5.4873 19 1 3.3450 -1.0801 -4.8444 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 1.2580 1.8161 1.9532 24 1 2.8732 1.0687 1.9598 25 1 3.5324 2.9762 3.4212 26 1 3.3863 4.6299 2.7785 27 1 1.9261 3.7196 3.2336 28 1 4.6008 4.0730 0.8433 29 1 4.8006 2.3699 1.3199 30 1 3.3715 3.3678 -1.1865 31 1 4.9859 2.6187 -1.1355 32 1 6.2066 0.9338 -3.1608 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259842970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:18 Heat of formation + Delta-G solvation = -67.804348 kcal Electronic energy + Delta-G solvation = -13572.440859 eV Core-core repulsion = 11339.006674 eV Total energy + Delta-G solvation = -2233.434186 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.26702 -37.78836 -35.58799 -32.90262 -30.91272 -28.59374 -27.37878 -25.77122 -23.50583 -23.00157 -20.60601 -18.48846 -17.48472 -16.74224 -16.44741 -15.99944 -15.58389 -15.42418 -14.75477 -14.47518 -14.10498 -13.49360 -13.32708 -12.89340 -12.85993 -12.61174 -12.56860 -12.38225 -12.01938 -11.85018 -11.56569 -11.15107 -10.80558 -10.42783 -10.17877 -9.27170 -8.06562 -6.17947 1.41536 1.43468 1.50905 2.45198 2.81227 3.20453 3.41889 4.00749 4.14151 4.32638 4.37826 4.48605 4.59617 4.62051 4.66424 4.70868 4.82554 4.85593 4.93070 5.00847 5.07363 5.17792 5.41173 5.60332 5.85653 5.95065 6.12589 6.22837 6.38542 6.63349 6.88986 7.47657 8.98622 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.035399 B = 0.012780 C = 0.009846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.790228 B = 2190.349416 C = 2843.161269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.107 3.893 4 H 0.051 0.949 5 C 0.047 3.953 6 N -0.548 5.548 7 C 0.026 3.974 8 C 0.062 3.938 9 C -0.096 4.096 10 C 0.049 3.951 11 H -0.013 1.013 12 C -0.518 4.518 13 H 0.046 0.954 14 C 0.011 3.989 15 N -0.919 5.919 16 Si 0.953 3.047 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.276 1.276 20 H 0.095 0.905 21 H 0.035 0.965 22 H 0.053 0.947 23 H 0.087 0.913 24 H 0.021 0.979 25 H 0.023 0.977 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.016 0.984 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 3.564 7.525 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C 0.049 3.951 4 H 0.069 0.931 5 C -0.082 4.082 6 N -0.274 5.274 7 C -0.121 4.121 8 C -0.065 4.065 9 C -0.134 4.134 10 C 0.030 3.970 11 H 0.006 0.994 12 C -0.557 4.557 13 H 0.065 0.935 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.779 3.221 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.202 1.202 20 H 0.114 0.886 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.105 0.895 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.486 3.703 7.195 10.370 hybrid contribution 0.522 -0.806 -0.562 1.112 sum -5.964 2.897 6.633 9.378 Atomic orbital electron populations 1.22905 0.80646 1.03242 1.00141 1.87925 1.20650 1.28706 1.94964 1.22127 0.95871 0.83062 0.94013 0.93138 1.22457 0.99367 0.89151 0.97189 1.61893 1.22597 1.23072 1.19809 1.22439 1.02498 0.99986 0.87206 1.22151 0.88863 1.00212 0.95316 1.21438 1.01843 0.96310 0.93831 1.18746 0.90656 0.93398 0.94151 0.99440 1.21322 0.93004 1.45486 0.95844 0.93527 1.25705 0.94981 0.95472 1.02524 1.69992 0.98782 1.50430 1.36738 0.85685 0.77309 0.78814 0.80285 1.19471 1.20738 1.20154 0.88637 0.94629 0.92853 0.89485 0.96034 0.95854 0.90057 0.89975 0.89799 0.96597 0.94321 0.91062 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.82 113.37 1.23 2.08 16 2 O -0.40 -17.75 10.05 -148.98 -1.50 -19.24 16 3 C 0.11 4.76 2.13 30.65 0.07 4.83 16 4 H 0.05 2.26 7.79 -2.39 -0.02 2.24 16 5 C 0.05 1.74 5.08 86.33 0.44 2.18 16 6 N -0.55 -19.23 4.91 -922.59 -4.53 -23.77 16 7 C 0.03 0.68 9.59 127.69 1.22 1.90 16 8 C 0.06 2.45 5.47 86.32 0.47 2.92 16 9 C -0.10 -4.66 5.12 30.65 0.16 -4.51 16 10 C 0.05 2.61 1.89 -11.46 -0.02 2.59 16 11 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 12 C -0.52 -29.94 8.28 25.60 0.21 -29.73 16 13 H 0.05 2.69 7.75 -2.91 -0.02 2.67 16 14 C 0.01 0.64 5.31 84.65 0.45 1.09 16 15 N -0.92 -54.30 11.37 21.45 0.24 -54.05 16 16 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 21 H 0.04 1.12 8.09 -2.39 -0.02 1.10 16 22 H 0.05 1.42 7.90 -2.38 -0.02 1.40 16 23 H 0.09 2.72 7.88 -2.39 -0.02 2.70 16 24 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.08 1.84 8.09 -2.38 -0.02 1.82 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 2.88 8.09 -2.39 -0.02 2.86 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 3.86 6.18 -2.39 -0.01 3.85 16 32 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -64.22 257.93 1.53 -62.69 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.06 Total: 3.97 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 4.22 Total: -16.66 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -4.29 Total: -77.82 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.50 Total: -19.24 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.22 1.53 -62.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259842970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.117 kcal (2) G-P(sol) polarization free energy of solvation -64.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds