Wall clock time and date at job start Mon Mar 30 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48720 * 111.01831 * 2 1 4 4 C 1.54381 * 104.51692 * 158.96284 * 3 2 1 5 5 C 1.54257 * 105.14978 * 336.27274 * 4 3 2 6 6 H 1.08995 * 110.32672 * 118.84838 * 5 4 3 7 7 C 1.53011 * 110.32060 * 241.05091 * 5 4 3 8 8 O 1.42896 * 109.46752 * 184.99907 * 7 5 4 9 9 C 1.42905 * 113.99814 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47423 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99870 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00078 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00305 * 359.97438 * 12 10 9 14 14 Si 1.86810 * 119.99791 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46837 * 89.99941 * 14 12 10 16 16 H 1.48498 * 109.46560 * 209.99960 * 14 12 10 17 17 H 1.48501 * 109.46953 * 329.99862 * 14 12 10 18 18 C 1.48567 * 110.99718 * 115.50982 * 2 1 3 19 19 H 1.09001 * 109.47412 * 304.49367 * 1 2 3 20 20 H 1.09003 * 109.46556 * 64.49268 * 1 2 3 21 21 H 1.08995 * 109.47730 * 184.49237 * 1 2 3 22 22 H 1.09004 * 110.38960 * 40.24251 * 3 2 1 23 23 H 1.08996 * 110.50963 * 277.74694 * 3 2 1 24 24 H 1.09002 * 110.32526 * 217.32092 * 4 3 2 25 25 H 1.08998 * 110.32190 * 95.21733 * 4 3 2 26 26 H 1.08998 * 109.47283 * 304.99963 * 7 5 4 27 27 H 1.08998 * 109.46626 * 64.99956 * 7 5 4 28 28 H 1.09006 * 109.46946 * 299.99979 * 9 8 7 29 29 H 1.08990 * 109.47325 * 59.99676 * 9 8 7 30 30 H 0.96996 * 120.00054 * 179.97438 * 13 12 10 31 31 H 1.08999 * 110.41133 * 82.17552 * 18 2 1 32 32 H 1.09004 * 110.50861 * 319.79003 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0024 1.3883 0.0000 4 6 3.4433 1.2492 0.5365 5 6 3.4432 -0.0562 1.3584 6 1 4.1483 -0.7709 0.9341 7 6 3.7947 0.2354 2.8188 8 8 3.9036 -0.9950 3.5372 9 6 4.2303 -0.8341 4.9191 10 6 4.3197 -2.1879 5.5751 11 1 4.1443 -3.0817 4.9948 12 6 4.6256 -2.2854 6.9160 13 7 4.8397 -1.1970 7.6225 14 14 4.7372 -3.9636 7.7289 15 1 6.1294 -4.4704 7.6289 16 1 4.3541 -3.8473 9.1589 17 1 3.8166 -4.9071 7.0449 18 6 2.0014 -0.5973 1.2518 19 1 -0.3634 0.5820 0.8470 20 1 -0.3632 0.4426 -0.9276 21 1 -0.3634 -1.0244 0.0805 22 1 1.4106 2.0225 0.6601 23 1 2.0109 1.7941 -1.0116 24 1 3.6937 2.0976 1.1733 25 1 4.1497 1.1758 -0.2904 26 1 4.7445 0.7682 2.8645 27 1 3.0121 0.8489 3.2653 28 1 5.1890 -0.3233 5.0088 29 1 3.4565 -0.2431 5.4090 30 1 5.0545 -1.2656 8.5659 31 1 2.0077 -1.6850 1.1812 32 1 1.4103 -0.2763 2.1096 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260206989.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:18 Heat of formation + Delta-G solvation = -75.582732 kcal Electronic energy + Delta-G solvation = -12735.326139 eV Core-core repulsion = 10501.554658 eV Total energy + Delta-G solvation = -2233.771482 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.17778 -38.26436 -35.02440 -33.67104 -30.50646 -29.24400 -27.43855 -25.11767 -24.34763 -22.12253 -21.08283 -18.67160 -17.63858 -16.96154 -16.63115 -16.39900 -16.03509 -15.21082 -15.00984 -14.56663 -13.93816 -13.71058 -13.32175 -13.04538 -12.76166 -12.68305 -12.42572 -12.37742 -12.19954 -12.10828 -11.75901 -11.41431 -11.29769 -10.88757 -10.27826 -9.51764 -8.34491 -6.47435 1.39212 1.42244 1.54336 2.33211 2.96969 2.99301 3.18560 3.62623 3.79923 4.06055 4.24191 4.38321 4.43175 4.48038 4.53429 4.64301 4.71052 4.77676 4.82393 4.90157 4.97236 5.06296 5.13103 5.18754 5.27595 5.52835 5.80229 5.92866 6.03643 6.50096 6.78600 7.24795 8.77964 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.062896 B = 0.006426 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.073329 B = 4356.119368 C = 4591.853668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.528 5.528 3 C 0.032 3.968 4 C -0.112 4.112 5 C -0.087 4.087 6 H 0.079 0.921 7 C 0.065 3.935 8 O -0.409 6.409 9 C 0.208 3.792 10 C -0.551 4.551 11 H 0.062 0.938 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.985 3.015 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.265 1.265 18 C 0.045 3.955 19 H 0.026 0.974 20 H 0.087 0.913 21 H 0.068 0.932 22 H 0.046 0.954 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.036 0.964 28 H -0.013 1.013 29 H -0.015 1.015 30 H 0.272 0.728 31 H 0.071 0.929 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 4.723 -13.213 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.252 5.252 3 C -0.096 4.096 4 C -0.150 4.150 5 C -0.106 4.106 6 H 0.098 0.902 7 C -0.013 4.013 8 O -0.329 6.329 9 C 0.134 3.866 10 C -0.589 4.589 11 H 0.080 0.920 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.807 3.193 15 H -0.192 1.192 16 H -0.198 1.198 17 H -0.189 1.189 18 C -0.083 4.083 19 H 0.045 0.955 20 H 0.106 0.894 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.120 0.880 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.005 0.995 29 H 0.003 0.997 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.531 4.317 -13.612 15.314 hybrid contribution -0.147 0.144 1.645 1.657 sum -5.678 4.461 -11.967 13.977 Atomic orbital electron populations 1.22560 0.87041 1.02343 1.01695 1.65427 1.09312 1.16142 1.34360 1.23247 0.94709 0.89495 1.02126 1.22320 0.97542 0.95692 0.99473 1.21844 0.97027 0.99091 0.92642 0.90221 1.22668 0.99197 0.87027 0.92372 1.87812 1.91421 1.30299 1.23372 1.19835 0.92588 0.96884 0.77341 1.21398 1.49328 0.92968 0.95166 0.91985 1.25984 0.93873 1.02169 0.97165 1.70066 1.47774 1.30287 1.08861 0.85162 0.79116 0.77669 0.77343 1.19157 1.19804 1.18878 1.23007 0.94514 1.00013 0.90729 0.95487 0.89433 0.91303 0.93577 0.88008 0.90245 0.89129 0.93596 0.94542 0.99529 0.99737 0.91961 0.91037 0.94874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.53 127.69 1.22 1.47 16 2 N -0.53 -13.47 5.66 -907.16 -5.13 -18.60 16 3 C 0.03 0.68 6.51 86.42 0.56 1.24 16 4 C -0.11 -2.58 6.64 31.49 0.21 -2.37 16 5 C -0.09 -2.70 3.33 -9.90 -0.03 -2.73 16 6 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 7 C 0.06 2.48 5.04 71.99 0.36 2.85 16 8 O -0.41 -20.62 10.22 -148.98 -1.52 -22.14 16 9 C 0.21 12.02 5.69 71.23 0.41 12.43 16 10 C -0.55 -33.46 9.43 25.60 0.24 -33.22 16 11 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 12 C 0.01 0.39 5.46 84.65 0.46 0.85 16 13 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 14 Si 0.98 44.71 29.54 68.60 2.03 46.74 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 18 C 0.05 1.41 5.94 86.45 0.51 1.92 16 19 H 0.03 0.57 7.98 -2.39 -0.02 0.55 16 20 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.05 0.96 7.91 -2.38 -0.02 0.94 16 23 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.08 1.70 7.71 -2.39 -0.02 1.68 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.38 7.98 -2.39 -0.02 1.36 16 28 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 29 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.03 1.11 7.58 -2.39 -0.02 1.09 16 Total: -1.00 -66.39 266.15 0.66 -65.73 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 1.06 Total: 2.04 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 3.94 Total: -17.57 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -4.85 Total: -74.80 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -1.52 Total: -22.14 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.39 0.66 -65.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206989.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.851 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds