Wall clock time and date at job start Mon Mar 30 2020 02:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31187 * 1 3 3 Si 1.86797 * 120.00024 * 2 1 4 4 H 1.48503 * 109.47137 * 270.00190 * 3 2 1 5 5 H 1.48505 * 109.47370 * 29.99844 * 3 2 1 6 6 H 1.48499 * 109.47006 * 150.00413 * 3 2 1 7 7 C 1.39179 * 119.99457 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99492 * 197.76300 * 7 2 1 9 9 N 1.37069 * 120.00587 * 17.76261 * 7 2 1 10 10 C 1.35844 * 120.09460 * 28.18697 * 9 7 2 11 11 N 1.30601 * 121.36041 * 180.02562 * 10 9 7 12 12 C 1.33551 * 121.51152 * 0.02562 * 11 10 9 13 13 C 1.36321 * 120.02385 * 0.02562 * 12 11 10 14 14 Cl 1.73601 * 120.64706 * 179.97438 * 13 12 11 15 15 C 1.35037 * 120.09986 * 208.21871 * 9 7 2 16 16 O 1.21974 * 120.70160 * 0.26331 * 15 9 7 17 17 H 0.97003 * 119.99380 * 359.97438 * 1 2 3 18 18 H 1.07997 * 119.32125 * 0.02562 * 10 9 7 19 19 H 1.08001 * 119.99087 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3119 0.0000 0.0000 3 14 2.2459 1.6177 0.0000 4 1 2.4933 2.0464 -1.4001 5 1 1.4433 2.6527 0.7000 6 1 3.5434 1.4401 0.6999 7 6 2.0076 -1.2054 -0.0005 8 1 3.0491 -1.2278 0.2848 9 7 1.3713 -2.3640 -0.3632 10 6 0.3260 -2.3245 -1.2299 11 7 -0.2984 -3.4130 -1.5918 12 6 0.0619 -4.6118 -1.1264 13 6 1.1026 -4.7198 -0.2526 14 17 1.5841 -6.2699 0.3630 15 6 1.7812 -3.5480 0.1405 16 8 2.7145 -3.6018 0.9240 17 1 -0.4849 0.8401 0.0004 18 1 0.0046 -1.3733 -1.6278 19 1 -0.4715 -5.4962 -1.4425 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260266704.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:31 Heat of formation + Delta-G solvation = -7.724146 kcal Electronic energy + Delta-G solvation = -10614.883068 eV Core-core repulsion = 8351.838125 eV Total energy + Delta-G solvation = -2263.044943 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 200.009 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.50982 -36.31335 -35.85754 -34.75320 -32.10425 -29.51471 -26.38768 -23.49892 -22.39767 -18.90362 -17.30154 -16.18269 -15.59045 -15.11423 -14.69677 -13.95975 -13.32019 -12.30877 -12.26824 -11.77204 -11.71918 -11.51766 -11.09249 -10.73439 -10.44636 -10.00405 -9.17096 -9.01638 -8.84005 -7.43492 -7.13477 -4.83558 1.66811 2.85074 2.86659 2.93684 2.95849 3.05993 3.61870 4.10880 4.33602 4.91651 5.26764 5.57184 6.24686 6.41320 6.78091 6.87761 7.28955 7.77609 8.12864 8.40061 8.99321 9.20586 9.81211 Molecular weight = 200.01amu Principal moments of inertia in cm(-1) A = 0.063945 B = 0.011808 C = 0.010276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.768237 B = 2370.625664 C = 2724.220713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.047 3.953 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.332 4.332 8 H 0.125 0.875 9 N -0.321 5.321 10 C 0.331 3.669 11 N -0.560 5.560 12 C 0.143 3.857 13 C -0.252 4.252 14 Cl -0.072 7.072 15 C 0.482 3.518 16 O -0.560 6.560 17 H 0.293 0.707 18 H 0.203 0.797 19 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 -0.344 -3.117 3.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.165 4.165 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.460 4.460 8 H 0.143 0.857 9 N -0.016 5.016 10 C 0.053 3.947 11 N -0.285 5.285 12 C -0.008 4.008 13 C -0.289 4.289 14 Cl -0.045 7.045 15 C 0.285 3.715 16 O -0.443 6.443 17 H 0.104 0.896 18 H 0.219 0.781 19 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.860 -0.344 -3.016 3.156 hybrid contribution 0.748 0.449 0.762 1.159 sum -0.112 0.106 -2.255 2.260 Atomic orbital electron populations 1.69725 1.06751 1.30744 1.38965 1.25842 0.95735 1.01546 0.93403 0.85533 0.79715 0.77932 0.79552 1.18837 1.19818 1.18272 1.20386 0.97744 0.82129 1.45789 0.85738 1.43006 1.22804 1.08637 1.27142 1.25140 0.85465 0.98384 0.85732 1.68414 1.31663 0.97247 1.31216 1.22240 0.91901 0.95687 0.91010 1.22177 1.07396 0.87463 1.11845 1.98242 1.92187 1.26239 1.87791 1.16882 0.87307 0.83346 0.84004 1.90797 1.30830 1.85933 1.36708 0.89565 0.78124 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.26 11.17 55.50 0.62 -18.64 13 2 C 0.05 1.07 5.00 -17.48 -0.09 0.99 13 3 Si 0.95 17.31 29.59 -169.99 -5.03 12.28 13 4 H -0.26 -4.62 7.11 56.52 0.40 -4.22 13 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 13 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 13 7 C -0.33 -8.37 9.14 -14.86 -0.14 -8.50 13 8 H 0.13 3.21 7.59 -52.48 -0.40 2.81 13 9 N -0.32 -8.21 2.74 -65.67 -0.18 -8.39 13 10 C 0.33 7.71 10.32 -89.56 -0.92 6.78 13 11 N -0.56 -12.31 10.39 -14.19 -0.15 -12.45 13 12 C 0.14 2.99 10.99 -17.49 -0.19 2.79 13 13 C -0.25 -5.83 6.36 -39.22 -0.25 -6.08 13 14 Cl -0.07 -1.49 28.63 -51.86 -1.48 -2.97 13 15 C 0.48 12.79 7.40 -15.09 -0.11 12.68 13 16 O -0.56 -16.31 16.51 4.94 0.08 -16.23 13 17 H 0.29 6.13 8.30 -40.82 -0.34 5.79 13 18 H 0.20 4.48 6.16 -52.49 -0.32 4.16 13 19 H 0.15 2.55 8.06 -52.49 -0.42 2.12 13 LS Contribution 199.69 15.07 3.01 3.01 Total: -1.00 -27.83 199.69 -5.11 -32.94 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -0.28 Total: 1.79 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -1.70 Total: 8.66 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.29 Total: -39.49 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.08 Total: -16.23 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -1.48 Total: -2.97 kcal Total LS contribution 3.01 Total: 3.01 kcal Total: -27.83 -5.11 -32.94 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260266704.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.220 kcal (2) G-P(sol) polarization free energy of solvation -27.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds