Wall clock time and date at job start Mon Mar 30 2020 02:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46909 * 110.99671 * 2 1 4 4 C 1.46898 * 111.00116 * 123.95070 * 2 1 3 5 5 C 1.50704 * 109.52452 * 304.61329 * 4 2 1 6 6 H 1.08001 * 119.99895 * 294.91533 * 5 4 2 7 7 C 1.37872 * 120.00136 * 114.91390 * 5 4 2 8 8 N 1.31514 * 119.99969 * 122.19015 * 7 5 4 9 9 Si 1.86806 * 120.00091 * 302.19104 * 7 5 4 10 10 H 1.48506 * 109.46948 * 95.15952 * 9 7 5 11 11 H 1.48505 * 109.47133 * 335.16426 * 9 7 5 12 12 H 1.48497 * 109.47076 * 215.15845 * 9 7 5 13 13 C 1.53179 * 109.57351 * 184.45669 * 4 2 1 14 14 C 1.53184 * 109.03329 * 183.08384 * 13 4 2 15 15 C 1.53092 * 109.16429 * 56.97977 * 14 13 4 16 16 O 1.42900 * 109.41307 * 302.38955 * 15 14 13 17 17 C 1.42905 * 114.09833 * 61.16186 * 16 15 14 18 18 H 1.09001 * 109.47413 * 299.01273 * 1 2 3 19 19 H 1.08998 * 109.47309 * 59.01583 * 1 2 3 20 20 H 1.08999 * 109.46857 * 179.01049 * 1 2 3 21 21 H 1.09001 * 109.46982 * 183.95165 * 3 2 1 22 22 H 1.08998 * 109.47131 * 303.94755 * 3 2 1 23 23 H 1.08995 * 109.47074 * 63.95408 * 3 2 1 24 24 H 0.97006 * 119.99689 * 179.97438 * 8 7 5 25 25 H 1.08992 * 109.54148 * 302.94449 * 13 4 2 26 26 H 1.09001 * 109.54648 * 63.22093 * 13 4 2 27 27 H 1.08998 * 109.51835 * 297.07176 * 14 13 4 28 28 H 1.09002 * 109.57122 * 176.91630 * 14 13 4 29 29 H 1.08998 * 109.47801 * 182.41065 * 15 14 13 30 30 H 1.08994 * 109.48960 * 62.37846 * 15 14 13 31 31 H 1.09001 * 109.47973 * 178.86177 * 17 16 15 32 32 H 1.08994 * 109.48983 * 58.82448 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.4227 -0.2203 2.4204 6 1 1.6664 0.7832 2.7367 7 6 0.5878 -1.0022 3.1900 8 7 0.8976 -1.2603 4.4418 9 14 -0.9837 -1.6948 2.4549 10 1 -0.7343 -3.0738 1.9633 11 1 -1.4208 -0.8376 1.3237 12 1 -2.0450 -1.7238 3.4931 13 6 3.5227 -0.6524 1.1699 14 6 4.0638 -1.5169 2.3129 15 6 3.5924 -2.9603 2.1179 16 8 2.1647 -2.9907 2.0658 17 6 1.6040 -2.2383 0.9881 18 1 -0.3634 0.4984 0.8987 19 1 -0.3634 0.5290 -0.8810 20 1 -0.3633 -1.0275 -0.0177 21 1 3.0827 1.3434 -0.0708 22 1 1.5898 1.9164 -0.8525 23 1 1.7043 1.8724 0.9233 24 1 0.3099 -1.8101 4.9834 25 1 3.9343 -1.0011 0.2228 26 1 3.8078 0.3870 1.3324 27 1 3.6913 -1.1373 3.2643 28 1 5.1534 -1.4860 2.3098 29 1 3.9388 -3.5715 2.9513 30 1 3.9986 -3.3528 1.1857 31 1 0.5179 -2.3294 1.0075 32 1 1.9840 -2.6211 0.0409 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260298669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:47 Heat of formation + Delta-G solvation = -25.267992 kcal Electronic energy + Delta-G solvation = -14437.900117 eV Core-core repulsion = 12206.310446 eV Total energy + Delta-G solvation = -2231.589671 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.67319 -37.53302 -34.54024 -33.64895 -31.09112 -28.77823 -26.91276 -25.40956 -25.01005 -22.39708 -20.38637 -18.29624 -17.81854 -16.70235 -16.23232 -16.03295 -15.59752 -15.02499 -14.61267 -14.53751 -14.23103 -14.06804 -13.40823 -13.26182 -12.55885 -12.44930 -12.30125 -12.05781 -11.75668 -11.55908 -11.35198 -11.11905 -10.83421 -10.25343 -9.91516 -8.72209 -8.58236 -5.92137 1.29921 1.47516 1.49096 2.45028 2.72290 3.17519 3.68030 4.17893 4.30074 4.31687 4.49281 4.56518 4.58642 4.69384 4.79871 4.82443 4.87308 4.99519 5.03274 5.15791 5.22300 5.28828 5.39736 5.53294 5.61549 5.76282 6.37817 6.39723 6.57692 6.73083 6.95174 7.49151 8.56109 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027505 B = 0.025376 C = 0.017389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.768658 B = 1103.126750 C = 1609.866159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.550 5.550 3 C 0.038 3.962 4 C 0.192 3.808 5 C -0.624 4.624 6 H 0.026 0.974 7 C 0.135 3.865 8 N -0.820 5.820 9 Si 0.811 3.189 10 H -0.278 1.278 11 H -0.202 1.202 12 H -0.314 1.314 13 C -0.091 4.091 14 C -0.136 4.136 15 C 0.065 3.935 16 O -0.393 6.393 17 C 0.074 3.926 18 H 0.024 0.976 19 H 0.070 0.930 20 H 0.046 0.954 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.005 0.995 24 H 0.264 0.736 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 -0.676 -7.577 8.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.275 5.275 3 C -0.110 4.110 4 C 0.104 3.896 5 C -0.657 4.657 6 H 0.045 0.955 7 C -0.080 4.080 8 N -0.447 5.447 9 Si 0.636 3.364 10 H -0.205 1.205 11 H -0.125 1.125 12 H -0.243 1.243 13 C -0.130 4.130 14 C -0.174 4.174 15 C -0.011 4.011 16 O -0.311 6.311 17 C -0.003 4.003 18 H 0.042 0.958 19 H 0.089 0.911 20 H 0.065 0.935 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.024 0.976 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.237 -1.071 -7.673 8.396 hybrid contribution -1.213 0.235 1.024 1.605 sum 2.024 -0.836 -6.648 7.000 Atomic orbital electron populations 1.22602 0.89118 1.00132 0.99768 1.62654 1.07163 1.13557 1.44104 1.22142 1.00132 0.89618 0.99109 1.19340 0.92675 0.90530 0.87084 1.20403 1.36433 1.00425 1.08483 0.95545 1.25127 0.98621 0.91212 0.93021 1.70769 1.33257 1.28650 1.12030 0.88522 0.85289 0.80440 0.82166 1.20511 1.12486 1.24279 1.21549 0.95572 0.98932 0.96930 1.21943 0.99671 0.96003 0.99767 1.22569 0.80861 0.96579 1.01141 1.87896 1.21151 1.70379 1.51638 1.22517 0.97214 0.92255 0.88331 0.95779 0.91133 0.93546 0.91661 0.91180 0.97590 0.92662 0.92366 0.93368 0.93185 0.90261 0.89272 0.92356 0.91900 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.29 7.05 127.69 0.90 2.19 16 2 N -0.55 -22.73 4.84 -902.43 -4.36 -27.09 16 3 C 0.04 1.42 8.78 127.69 1.12 2.54 16 4 C 0.19 8.78 0.43 2.87 0.00 8.78 16 5 C -0.62 -33.69 5.37 25.60 0.14 -33.55 16 6 H 0.03 1.61 7.36 -2.91 -0.02 1.59 16 7 C 0.13 7.45 3.77 84.65 0.32 7.77 16 8 N -0.82 -47.67 13.96 21.45 0.30 -47.37 16 9 Si 0.81 39.86 23.12 68.60 1.59 41.44 16 10 H -0.28 -13.88 6.50 99.48 0.65 -13.23 16 11 H -0.20 -8.93 4.07 99.48 0.40 -8.52 16 12 H -0.31 -15.93 7.11 99.48 0.71 -15.23 16 13 C -0.09 -3.73 4.15 30.72 0.13 -3.61 16 14 C -0.14 -5.43 5.88 30.69 0.18 -5.25 16 15 C 0.06 2.51 6.84 72.01 0.49 3.00 16 16 O -0.39 -18.70 9.30 -148.98 -1.39 -20.08 16 17 C 0.07 3.36 4.55 72.01 0.33 3.69 16 18 H 0.02 1.08 5.49 -2.39 -0.01 1.06 16 19 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 20 H 0.05 1.89 4.68 -2.39 -0.01 1.88 16 21 H 0.06 2.25 6.28 -2.39 -0.01 2.24 16 22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.01 0.23 6.94 -2.39 -0.02 0.21 16 24 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 1.98 6.54 -2.39 -0.02 1.96 16 27 H 0.05 2.44 7.39 -2.39 -0.02 2.43 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.06 3.02 2.22 -2.39 -0.01 3.01 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -60.64 227.92 0.48 -60.16 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.74 Total: 7.38 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.61 Total: -14.43 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -4.07 Total: -74.46 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -1.39 Total: -20.08 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.59 Total: 41.44 kcal Total: -60.64 0.48 -60.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260298669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.892 kcal (2) G-P(sol) polarization free energy of solvation -60.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds