Wall clock time and date at job start Mon Mar 30 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.46901 * 2 1 4 4 O 1.34288 * 125.40466 * 270.26542 * 3 2 1 5 5 C 1.35085 * 109.39029 * 180.21171 * 4 3 2 6 6 C 1.39745 * 126.18729 * 179.83248 * 5 4 3 7 7 H 1.07999 * 120.00159 * 179.68829 * 6 5 4 8 8 C 1.40155 * 119.99910 * 359.68871 * 6 5 4 9 9 N 1.30811 * 120.00020 * 359.72685 * 8 6 5 10 10 Si 1.86795 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47273 * 59.99819 * 10 8 6 12 12 H 1.48505 * 109.47234 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47290 * 300.00015 * 10 8 6 14 14 C 1.39543 * 107.62453 * 359.56887 * 5 4 3 15 15 C 1.35781 * 125.40050 * 90.00322 * 3 2 1 16 16 Cl 1.73602 * 126.33637 * 359.96471 * 15 3 2 17 17 H 1.08997 * 109.47402 * 299.99434 * 1 2 3 18 18 H 1.08999 * 109.47304 * 60.00250 * 1 2 3 19 19 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47402 * 240.00566 * 2 1 3 21 21 H 1.08996 * 109.47867 * 120.00239 * 2 1 3 22 22 H 0.97000 * 120.00315 * 180.02562 * 9 8 6 23 23 H 1.08000 * 126.76666 * 180.24467 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2868 2.1561 -1.0945 5 6 2.7256 3.3781 -0.7219 6 6 3.0944 4.4189 -1.5784 7 1 3.4280 5.3616 -1.1703 8 6 3.0314 4.2395 -2.9670 9 7 2.6324 3.0959 -3.4612 10 14 3.5250 5.6304 -4.1119 11 1 4.9417 5.9983 -3.8617 12 1 3.3689 5.1903 -5.5216 13 1 2.6562 6.8087 -3.8626 14 6 2.7383 3.4153 0.6730 15 6 2.2945 2.1625 1.1068 16 17 2.1124 1.6498 2.7554 17 1 -0.3634 0.5137 0.8900 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 1.8933 -0.5137 -0.8900 21 1 1.8934 -0.5138 0.8899 22 1 2.5891 2.9716 -4.4223 23 1 3.0331 4.2476 1.2948 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260497802.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:15 Heat of formation + Delta-G solvation = -43.761163 kcal Electronic energy + Delta-G solvation = -10668.736294 eV Core-core repulsion = 8507.669013 eV Total energy + Delta-G solvation = -2161.067282 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.034 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.45321 -37.35145 -35.78860 -34.45168 -32.85321 -30.39474 -26.86756 -23.89250 -22.04402 -21.17117 -19.56236 -17.21171 -16.54452 -16.25237 -15.48635 -15.11230 -14.45017 -13.90363 -13.50696 -13.26852 -13.07742 -12.92968 -12.89284 -12.71211 -12.44060 -11.96277 -11.88913 -11.32666 -11.32352 -10.01544 -9.15576 -8.80427 -6.51683 1.13776 1.38497 1.44792 1.54120 1.55324 1.97633 2.16707 2.90016 3.13833 4.15488 4.36618 4.50978 4.66040 4.98289 4.99102 5.03648 5.08523 5.26140 5.36757 5.46293 5.92260 6.02575 6.47787 6.58638 7.11087 8.21456 Molecular weight = 200.03amu Principal moments of inertia in cm(-1) A = 0.052826 B = 0.010616 C = 0.009076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.912973 B = 2636.793380 C = 3084.419448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.022 4.022 3 C -0.143 4.143 4 O -0.170 6.170 5 C 0.180 3.820 6 C -0.473 4.473 7 H 0.114 0.886 8 C 0.024 3.976 9 N -0.812 5.812 10 Si 1.006 2.994 11 H -0.254 1.254 12 H -0.265 1.265 13 H -0.254 1.254 14 C -0.413 4.413 15 C -0.077 4.077 16 Cl -0.060 7.060 17 H 0.049 0.951 18 H 0.037 0.963 19 H 0.088 0.912 20 H 0.069 0.931 21 H 0.091 0.909 22 H 0.296 0.704 23 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -2.179 1.551 3.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 C -0.193 4.193 4 O -0.068 6.068 5 C 0.128 3.872 6 C -0.501 4.501 7 H 0.131 0.869 8 C -0.194 4.194 9 N -0.438 5.438 10 Si 0.824 3.176 11 H -0.177 1.177 12 H -0.189 1.189 13 H -0.178 1.178 14 C -0.434 4.434 15 C -0.104 4.104 16 Cl -0.032 7.032 17 H 0.069 0.931 18 H 0.057 0.943 19 H 0.107 0.893 20 H 0.088 0.912 21 H 0.110 0.890 22 H 0.106 0.894 23 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.532 -2.505 1.242 3.188 hybrid contribution 0.237 0.590 0.021 0.636 sum -1.294 -1.915 1.263 2.634 Atomic orbital electron populations 1.21696 0.93884 1.02636 1.01147 1.19824 0.96580 0.86608 1.02937 1.22361 1.15943 0.97351 0.83597 1.84456 1.67475 1.23089 1.31786 1.19926 0.91913 0.83401 0.91951 1.19162 1.41263 0.98564 0.91152 0.86856 1.27197 0.91932 0.99832 1.00423 1.69829 1.32083 1.25631 1.16228 0.84883 0.80090 0.76787 0.75799 1.17745 1.18871 1.17756 1.21209 1.29173 0.99594 0.93467 1.20503 1.09575 0.95807 0.84552 1.98199 1.96750 1.90682 1.17566 0.93144 0.94349 0.89346 0.91197 0.89050 0.89355 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.89 71.98 0.71 -3.77 14 2 C -0.02 -0.85 6.29 29.85 0.19 -0.66 14 3 C -0.14 -7.10 6.57 25.12 0.17 -6.93 14 4 O -0.17 -9.76 8.97 -10.20 -0.09 -9.85 14 5 C 0.18 10.36 6.79 22.95 0.16 10.52 14 6 C -0.47 -25.66 9.32 23.10 0.22 -25.44 14 7 H 0.11 5.69 7.85 -2.91 -0.02 5.67 14 8 C 0.02 1.19 5.50 85.31 0.47 1.66 14 9 N -0.81 -42.99 12.01 21.87 0.26 -42.73 14 10 Si 1.01 36.70 29.56 68.60 2.03 38.73 14 11 H -0.25 -8.86 7.11 99.48 0.71 -8.16 14 12 H -0.26 -9.08 7.11 99.48 0.71 -8.37 14 13 H -0.25 -8.87 7.11 99.48 0.71 -8.16 14 14 C -0.41 -22.18 10.94 22.97 0.25 -21.93 14 15 C -0.08 -3.75 6.68 22.08 0.15 -3.60 14 16 Cl -0.06 -2.37 28.84 -2.72 -0.08 -2.45 14 17 H 0.05 1.67 8.14 -2.39 -0.02 1.65 14 18 H 0.04 1.37 8.14 -2.39 -0.02 1.35 14 19 H 0.09 2.21 8.14 -2.39 -0.02 2.19 14 20 H 0.07 2.58 8.14 -2.39 -0.02 2.56 14 21 H 0.09 3.07 7.87 -2.39 -0.02 3.06 14 22 H 0.30 13.94 8.30 -92.71 -0.77 13.17 14 23 H 0.12 6.29 8.06 -2.91 -0.02 6.27 14 Total: -1.00 -60.85 227.33 5.63 -55.22 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.21 Total: 11.23 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 2.30 Total: -50.15 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.26 Total: -42.73 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.09 Total: -9.85 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.08 Total: -2.45 kcal Total: -60.85 5.63 -55.22 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260497802.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.456 kcal (2) G-P(sol) polarization free energy of solvation -60.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds