Wall clock time and date at job start Mon Mar 30 2020 02:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47367 * 2 1 4 4 C 1.46846 * 111.00075 * 294.20617 * 3 2 1 5 5 C 1.53038 * 109.52484 * 174.16076 * 4 3 2 6 6 C 1.53125 * 109.27727 * 59.18091 * 5 4 3 7 7 C 1.53118 * 109.15900 * 302.34912 * 6 5 4 8 8 O 1.42904 * 109.53319 * 297.68805 * 7 6 5 9 9 C 1.50703 * 109.50126 * 177.59548 * 7 6 5 10 10 H 1.08002 * 120.00173 * 239.74243 * 9 7 6 11 11 C 1.37878 * 119.99965 * 59.73503 * 9 7 6 12 12 N 1.31512 * 120.00207 * 6.03674 * 11 9 7 13 13 Si 1.86801 * 119.99951 * 186.02973 * 11 9 7 14 14 H 1.48499 * 109.46888 * 94.98826 * 13 11 9 15 15 H 1.48496 * 109.47129 * 214.98628 * 13 11 9 16 16 H 1.48497 * 109.47260 * 334.98850 * 13 11 9 17 17 C 1.46850 * 110.99795 * 169.99963 * 3 2 1 18 18 H 1.08989 * 109.47504 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.46911 * 300.00078 * 1 2 3 20 20 H 1.09001 * 109.46783 * 59.99591 * 1 2 3 21 21 H 1.09003 * 109.47165 * 239.99436 * 2 1 3 22 22 H 1.09001 * 109.46783 * 120.00409 * 2 1 3 23 23 H 1.08998 * 109.46852 * 294.17900 * 4 3 2 24 24 H 1.09001 * 109.45995 * 54.14741 * 4 3 2 25 25 H 1.09000 * 109.50304 * 299.24436 * 5 4 3 26 26 H 1.08997 * 109.53663 * 179.14433 * 5 4 3 27 27 H 1.08999 * 109.52266 * 182.43839 * 6 5 4 28 28 H 1.08999 * 109.56826 * 62.28406 * 6 5 4 29 29 H 0.96695 * 114.00523 * 299.82577 * 8 7 6 30 30 H 0.97002 * 120.00036 * 179.97438 * 12 11 9 31 31 H 1.08998 * 109.46725 * 305.85620 * 17 3 2 32 32 H 1.09004 * 109.46349 * 65.83405 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6652 2.0684 -1.2504 5 6 2.0609 3.5438 -1.1567 6 6 3.5679 3.6481 -0.9057 7 6 3.9176 2.8872 0.3762 8 8 3.2497 3.4895 1.4867 9 6 5.4073 2.9349 0.5990 10 1 5.9761 2.0180 0.6455 11 6 6.0442 4.1493 0.7433 12 7 5.3397 5.2580 0.8055 13 14 7.9078 4.2196 0.8505 14 1 8.4715 4.4848 -0.4975 15 1 8.3096 5.3076 1.7778 16 1 8.4239 2.9223 1.3563 17 6 3.4681 1.4309 0.2381 18 1 -0.3634 -1.0275 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 2.1944 1.6026 -2.0817 24 1 0.5905 1.9904 -1.4148 25 1 1.5217 4.0137 -0.3342 26 1 1.8117 4.0480 -2.0904 27 1 3.8471 4.6959 -0.7952 28 1 4.1089 3.2137 -1.7463 29 1 3.4873 4.4152 1.6338 30 1 5.7878 6.1123 0.9074 31 1 3.7029 0.8899 1.1547 32 1 3.9888 0.9682 -0.6003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260535196.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:26 Heat of formation + Delta-G solvation = -56.754739 kcal Electronic energy + Delta-G solvation = -13720.296475 eV Core-core repulsion = 11487.341436 eV Total energy + Delta-G solvation = -2232.955039 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.45242 -35.29695 -32.21173 -31.93103 -29.83735 -28.50143 -25.06759 -23.59084 -21.67305 -20.47053 -18.51619 -16.84840 -15.24890 -14.92229 -14.58739 -14.29706 -13.61999 -13.35561 -12.83462 -12.64409 -11.93254 -11.66057 -11.49940 -11.26558 -11.22691 -10.98949 -10.69207 -10.58921 -10.17767 -10.12227 -9.89234 -9.59132 -8.94586 -8.47116 -7.84712 -7.50765 -6.13431 -4.22411 3.24534 3.32215 3.35857 4.32554 4.62694 5.12505 5.36777 5.57686 5.69552 5.81647 5.86966 6.05877 6.11046 6.15804 6.25825 6.37392 6.45134 6.50464 6.62961 6.75171 6.80707 7.08582 7.23291 7.58395 7.69683 7.82821 7.90111 8.04413 8.28272 8.79835 9.45664 9.80230 10.90842 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059171 B = 0.010579 C = 0.009920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.087786 B = 2646.050134 C = 2821.977142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.528 5.528 4 C 0.061 3.939 5 C -0.114 4.114 6 C -0.137 4.137 7 C 0.260 3.740 8 O -0.578 6.578 9 C -0.538 4.538 10 H 0.058 0.942 11 C 0.071 3.929 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.079 3.921 18 H 0.050 0.950 19 H 0.062 0.938 20 H 0.051 0.949 21 H 0.021 0.979 22 H 0.068 0.932 23 H 0.018 0.982 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.376 0.624 30 H 0.266 0.734 31 H 0.065 0.935 32 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 -5.049 -3.341 8.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 N -0.252 5.252 4 C -0.067 4.067 5 C -0.152 4.152 6 C -0.175 4.175 7 C 0.219 3.781 8 O -0.386 6.386 9 C -0.577 4.577 10 H 0.076 0.924 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.048 4.048 18 H 0.069 0.931 19 H 0.081 0.919 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.087 0.913 23 H 0.037 0.963 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.056 0.944 29 H 0.226 0.774 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.918 -5.216 -2.889 8.401 hybrid contribution 1.776 0.200 -0.790 1.954 sum -4.143 -5.016 -3.680 7.474 Atomic orbital electron populations 1.21786 0.95652 1.00547 1.02332 1.22044 0.95561 0.90478 0.99883 1.61931 1.15732 1.13331 1.34243 1.22069 0.99024 0.95856 0.89783 1.21574 0.99293 0.94256 1.00045 1.22197 0.92072 1.04222 0.99037 1.18525 0.89227 0.86689 0.83628 1.86179 1.69920 1.31079 1.51456 1.21769 0.93307 0.92890 1.49717 0.92395 1.24962 0.98702 0.95467 0.93933 1.69572 1.35527 0.98170 1.50398 0.86489 0.85212 0.77867 0.77868 1.20681 1.21075 1.19833 1.22119 0.84689 0.99098 0.98884 0.93113 0.91908 0.92984 0.96069 0.91320 0.96343 0.92032 0.91344 0.93753 0.89504 0.94403 0.77431 0.92356 0.91672 0.95497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.84 37.16 0.37 -1.64 16 2 C 0.05 0.80 5.68 -3.83 -0.02 0.78 16 3 N -0.53 -10.64 4.54 -234.67 -1.07 -11.71 16 4 C 0.06 1.14 5.29 -3.83 -0.02 1.12 16 5 C -0.11 -2.33 5.94 -26.65 -0.16 -2.49 16 6 C -0.14 -3.27 4.73 -26.61 -0.13 -3.40 16 7 C 0.26 6.62 0.68 -91.69 -0.06 6.56 16 8 O -0.58 -15.68 12.30 -35.23 -0.43 -16.11 16 9 C -0.54 -14.76 8.24 -34.44 -0.28 -15.04 16 10 H 0.06 1.58 7.75 -52.49 -0.41 1.17 16 11 C 0.07 1.90 5.20 -17.82 -0.09 1.81 16 12 N -0.90 -24.26 9.78 55.43 0.54 -23.71 16 13 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C 0.08 1.81 4.37 -3.83 -0.02 1.79 16 18 H 0.05 0.58 8.14 -51.94 -0.42 0.15 16 19 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 20 H 0.05 0.69 6.43 -51.93 -0.33 0.36 16 21 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 22 H 0.07 1.10 7.99 -51.93 -0.41 0.69 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 1.02 6.21 -51.93 -0.32 0.70 16 25 H 0.07 1.49 7.80 -51.93 -0.41 1.08 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 2.25 6.37 -51.93 -0.33 1.92 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.38 10.39 6.97 45.56 0.32 10.70 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.06 1.51 8.02 -51.93 -0.42 1.09 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 250.27 15.07 3.77 3.77 Total: -1.00 -27.82 250.27 -7.03 -34.85 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.41 Total: 7.50 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.42 Total: -10.50 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.52 Total: -35.42 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.43 Total: -16.11 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.82 -7.03 -34.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535196.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.905 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds