Wall clock time and date at job start Mon Mar 30 2020 02:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47367 * 2 1 4 4 C 1.46846 * 111.00075 * 294.20617 * 3 2 1 5 5 C 1.53038 * 109.52484 * 174.16076 * 4 3 2 6 6 C 1.53125 * 109.27727 * 59.18091 * 5 4 3 7 7 C 1.53118 * 109.15900 * 302.34912 * 6 5 4 8 8 O 1.42904 * 109.53319 * 297.68805 * 7 6 5 9 9 C 1.50703 * 109.50126 * 177.59548 * 7 6 5 10 10 H 1.08002 * 120.00173 * 239.74243 * 9 7 6 11 11 C 1.37878 * 119.99965 * 59.73503 * 9 7 6 12 12 N 1.31512 * 120.00207 * 6.03674 * 11 9 7 13 13 Si 1.86801 * 119.99951 * 186.02973 * 11 9 7 14 14 H 1.48499 * 109.46888 * 94.98826 * 13 11 9 15 15 H 1.48496 * 109.47129 * 214.98628 * 13 11 9 16 16 H 1.48497 * 109.47260 * 334.98850 * 13 11 9 17 17 C 1.46850 * 110.99795 * 169.99963 * 3 2 1 18 18 H 1.08989 * 109.47504 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.46911 * 300.00078 * 1 2 3 20 20 H 1.09001 * 109.46783 * 59.99591 * 1 2 3 21 21 H 1.09003 * 109.47165 * 239.99436 * 2 1 3 22 22 H 1.09001 * 109.46783 * 120.00409 * 2 1 3 23 23 H 1.08998 * 109.46852 * 294.17900 * 4 3 2 24 24 H 1.09001 * 109.45995 * 54.14741 * 4 3 2 25 25 H 1.09000 * 109.50304 * 299.24436 * 5 4 3 26 26 H 1.08997 * 109.53663 * 179.14433 * 5 4 3 27 27 H 1.08999 * 109.52266 * 182.43839 * 6 5 4 28 28 H 1.08999 * 109.56826 * 62.28406 * 6 5 4 29 29 H 0.96695 * 114.00523 * 299.82577 * 8 7 6 30 30 H 0.97002 * 120.00036 * 179.97438 * 12 11 9 31 31 H 1.08998 * 109.46725 * 305.85620 * 17 3 2 32 32 H 1.09004 * 109.46349 * 65.83405 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6652 2.0684 -1.2504 5 6 2.0609 3.5438 -1.1567 6 6 3.5679 3.6481 -0.9057 7 6 3.9176 2.8872 0.3762 8 8 3.2497 3.4895 1.4867 9 6 5.4073 2.9349 0.5990 10 1 5.9761 2.0180 0.6455 11 6 6.0442 4.1493 0.7433 12 7 5.3397 5.2580 0.8055 13 14 7.9078 4.2196 0.8505 14 1 8.4715 4.4848 -0.4975 15 1 8.3096 5.3076 1.7778 16 1 8.4239 2.9223 1.3563 17 6 3.4681 1.4309 0.2381 18 1 -0.3634 -1.0275 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 2.1944 1.6026 -2.0817 24 1 0.5905 1.9904 -1.4148 25 1 1.5217 4.0137 -0.3342 26 1 1.8117 4.0480 -2.0904 27 1 3.8471 4.6959 -0.7952 28 1 4.1089 3.2137 -1.7463 29 1 3.4873 4.4152 1.6338 30 1 5.7878 6.1123 0.9074 31 1 3.7029 0.8899 1.1547 32 1 3.9888 0.9682 -0.6003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260535196.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:26 Heat of formation + Delta-G solvation = -76.528342 kcal Electronic energy + Delta-G solvation = -13721.153923 eV Core-core repulsion = 11487.341436 eV Total energy + Delta-G solvation = -2233.812487 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.16408 -37.08916 -34.07488 -33.80154 -31.47131 -30.17053 -27.00498 -25.15630 -23.35759 -22.00225 -20.33363 -18.86816 -16.99238 -16.83164 -16.23204 -15.80187 -15.38391 -15.11449 -14.56811 -14.15191 -13.60985 -13.35972 -13.10677 -13.03534 -12.84068 -12.61672 -12.37278 -12.21968 -11.96798 -11.93633 -11.55929 -11.43242 -10.78814 -10.51168 -9.88517 -9.05270 -8.17435 -6.34862 1.39266 1.41397 1.51315 2.38546 3.04131 3.13462 4.04472 4.09004 4.21214 4.32957 4.43291 4.54763 4.63376 4.68317 4.70269 4.88440 4.92230 4.96591 5.12850 5.13527 5.31247 5.38258 5.40959 5.57475 5.75135 6.01837 6.11322 6.34371 6.42686 6.72200 7.36180 7.65599 8.84817 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059171 B = 0.010579 C = 0.009920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.087786 B = 2646.050134 C = 2821.977142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.045 3.955 3 N -0.544 5.544 4 C 0.062 3.938 5 C -0.108 4.108 6 C -0.130 4.130 7 C 0.246 3.754 8 O -0.587 6.587 9 C -0.568 4.568 10 H 0.049 0.951 11 C 0.030 3.970 12 N -0.910 5.910 13 Si 0.959 3.041 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.274 1.274 17 C 0.087 3.913 18 H 0.078 0.922 19 H 0.052 0.948 20 H 0.058 0.942 21 H 0.032 0.968 22 H 0.066 0.934 23 H 0.025 0.975 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.368 0.632 30 H 0.269 0.731 31 H 0.052 0.948 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 -5.786 -4.145 9.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 N -0.269 5.269 4 C -0.065 4.065 5 C -0.146 4.146 6 C -0.169 4.169 7 C 0.206 3.794 8 O -0.395 6.395 9 C -0.606 4.606 10 H 0.067 0.933 11 C -0.170 4.170 12 N -0.551 5.551 13 Si 0.784 3.216 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.198 1.198 17 C -0.041 4.041 18 H 0.096 0.904 19 H 0.071 0.929 20 H 0.077 0.923 21 H 0.051 0.949 22 H 0.085 0.915 23 H 0.043 0.957 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.217 0.783 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.505 -5.965 -3.700 9.570 hybrid contribution 1.937 0.425 -0.527 2.052 sum -4.568 -5.540 -4.227 8.332 Atomic orbital electron populations 1.21737 0.93284 1.02365 1.02142 1.22176 0.97419 0.88341 1.00345 1.61894 1.13691 1.15960 1.35359 1.22101 1.00825 0.94231 0.89352 1.21516 0.96319 0.96081 1.00707 1.22026 0.94657 1.02136 0.98040 1.18763 0.88530 0.88410 0.83712 1.86169 1.70194 1.30597 1.52509 1.22051 0.94709 0.92950 1.50930 0.93253 1.25662 1.02772 0.95118 0.93447 1.69660 1.36909 0.98451 1.50038 0.85546 0.80245 0.77755 0.78042 1.19996 1.20521 1.19833 1.21881 0.86852 0.96952 0.98372 0.90359 0.92905 0.92281 0.94939 0.91527 0.95665 0.89102 0.92918 0.91123 0.92092 0.94853 0.78255 0.92115 0.92941 0.95393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.84 71.98 0.71 -2.64 16 2 C 0.04 1.37 5.68 86.31 0.49 1.86 16 3 N -0.54 -21.15 4.54 -896.37 -4.07 -25.22 16 4 C 0.06 2.19 5.29 86.33 0.46 2.65 16 5 C -0.11 -4.29 5.94 30.65 0.18 -4.11 16 6 C -0.13 -6.23 4.73 30.68 0.14 -6.09 16 7 C 0.25 12.68 0.68 -11.49 -0.01 12.67 16 8 O -0.59 -32.42 12.30 -148.98 -1.83 -34.25 16 9 C -0.57 -31.60 8.24 25.60 0.21 -31.39 16 10 H 0.05 2.74 7.75 -2.91 -0.02 2.72 16 11 C 0.03 1.63 5.20 84.66 0.44 2.07 16 12 N -0.91 -49.76 9.78 21.45 0.21 -49.55 16 13 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 C 0.09 3.97 4.37 86.32 0.38 4.35 16 18 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 19 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 20 H 0.06 1.35 6.43 -2.39 -0.02 1.33 16 21 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 22 H 0.07 2.04 7.99 -2.39 -0.02 2.02 16 23 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.09 2.69 6.21 -2.39 -0.01 2.67 16 25 H 0.05 2.24 7.80 -2.39 -0.02 2.23 16 26 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.06 3.21 6.37 -2.39 -0.02 3.19 16 28 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.37 20.94 6.97 -74.06 -0.52 20.42 16 30 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.05 2.45 8.02 -2.39 -0.02 2.43 16 32 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -58.88 250.27 -0.09 -58.97 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.57 Total: 25.67 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 3.00 Total: -20.64 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -3.86 Total: -74.77 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.83 Total: -34.25 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -58.88 -0.09 -58.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535196.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.554 kcal (2) G-P(sol) polarization free energy of solvation -58.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds