Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46846 * 110.99840 * 2 1 4 4 C 1.53035 * 109.52529 * 174.16228 * 3 2 1 5 5 C 1.53120 * 109.27966 * 59.17904 * 4 3 2 6 6 C 1.53122 * 109.16286 * 302.34916 * 5 4 3 7 7 C 1.46854 * 110.99962 * 235.79368 * 2 1 3 8 8 H 1.09004 * 109.45935 * 65.83382 * 7 2 1 9 9 C 1.52997 * 109.46198 * 305.85132 * 7 2 1 10 10 O 1.42900 * 109.47479 * 296.07249 * 9 7 2 11 11 C 1.34919 * 117.00089 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00484 * 359.97438 * 11 10 9 13 13 C 1.38639 * 120.00000 * 180.27488 * 11 10 9 14 14 N 1.31584 * 119.99860 * 359.72237 * 13 11 10 15 15 Si 1.86792 * 120.00064 * 179.72672 * 13 11 10 16 16 H 1.48504 * 109.47390 * 90.00207 * 15 13 11 17 17 H 1.48504 * 109.47072 * 209.99798 * 15 13 11 18 18 H 1.48498 * 109.47395 * 329.99863 * 15 13 11 19 19 H 1.09003 * 109.46996 * 190.77292 * 1 2 3 20 20 H 1.08997 * 109.47177 * 310.76799 * 1 2 3 21 21 H 1.08995 * 109.47270 * 70.77723 * 1 2 3 22 22 H 1.09005 * 109.46642 * 294.17892 * 3 2 1 23 23 H 1.08999 * 109.46240 * 54.16140 * 3 2 1 24 24 H 1.09001 * 109.50742 * 179.12591 * 4 3 2 25 25 H 1.09007 * 109.50083 * 299.24115 * 4 3 2 26 26 H 1.09003 * 109.52354 * 62.25347 * 5 4 3 27 27 H 1.08999 * 109.52764 * 182.38016 * 5 4 3 28 28 H 1.08997 * 109.50129 * 297.71200 * 6 5 4 29 29 H 1.08997 * 109.50287 * 177.59007 * 6 5 4 30 30 H 1.08994 * 109.46840 * 176.06954 * 9 7 2 31 31 H 1.09004 * 109.46982 * 56.07403 * 9 7 2 32 32 H 0.96996 * 119.99992 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5371 -1.0144 6 6 3.5182 -0.8714 -1.0210 7 6 1.9953 -0.7707 -1.1338 8 1 1.7326 -0.2706 -2.0661 9 6 1.3892 -2.1755 -1.1205 10 8 1.8082 -2.8640 0.0595 11 6 1.3577 -4.1248 0.2257 12 1 0.7100 -4.5690 -0.5157 13 6 1.7210 -4.8481 1.3512 14 7 2.5098 -4.3068 2.2548 15 14 1.0911 -6.5909 1.5850 16 1 2.0432 -7.5486 0.9672 17 1 0.9677 -6.8822 3.0360 18 1 -0.2385 -6.7278 0.9379 19 1 -0.3633 -1.0096 0.1921 20 1 -0.3633 0.6710 0.7783 21 1 -0.3633 0.3383 -0.9703 22 1 1.7324 1.8609 -0.9376 23 1 1.5636 1.9256 0.8331 24 1 3.9099 2.3513 0.1311 25 1 3.7813 0.8568 1.0906 26 1 3.8887 1.0356 -1.9561 27 1 5.1999 0.4725 -0.8912 28 1 3.7814 -1.3835 -0.0955 29 1 3.9099 -1.4301 -1.8710 30 1 1.7252 -2.7244 -2.0001 31 1 0.3017 -2.1021 -1.1315 32 1 2.7637 -4.8127 3.0424 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261033621.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = -36.350949 kcal Electronic energy + Delta-G solvation = -13438.367377 eV Core-core repulsion = 11206.297113 eV Total energy + Delta-G solvation = -2232.070264 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.79196 -35.76150 -33.09088 -31.87206 -30.59185 -26.57567 -25.43157 -23.95052 -22.41059 -20.70236 -19.04570 -17.36965 -15.56061 -15.04005 -14.80616 -14.12845 -13.99677 -13.81707 -13.26960 -12.63636 -12.44981 -12.35280 -11.79519 -11.34841 -11.22377 -11.03435 -10.88606 -10.71060 -10.23359 -10.22135 -9.95897 -9.71839 -9.33337 -8.92298 -7.82729 -7.65790 -5.82580 -3.45138 3.36600 3.39386 3.43102 4.37401 4.43209 5.18268 5.25095 5.33731 5.47686 5.51233 5.69150 5.73022 5.83646 5.93228 5.95076 6.03351 6.11711 6.26824 6.39991 6.43101 6.47190 6.61651 6.62743 6.69463 6.76045 7.17924 7.56792 7.68593 7.73976 8.54262 9.60257 10.33191 11.38051 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050045 B = 0.009440 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.364142 B = 2965.373091 C = 3104.567623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.108 4.108 7 C 0.097 3.903 8 H 0.033 0.967 9 C 0.076 3.924 10 O -0.273 6.273 11 C -0.361 4.361 12 H 0.057 0.943 13 C 0.024 3.976 14 N -0.884 5.884 15 Si 0.920 3.080 16 H -0.282 1.282 17 H -0.284 1.284 18 H -0.277 1.277 19 H 0.079 0.921 20 H 0.059 0.941 21 H 0.013 0.987 22 H 0.021 0.979 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 9.465 -5.918 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.244 5.244 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.011 4.011 8 H 0.050 0.950 9 C -0.003 4.003 10 O -0.187 6.187 11 C -0.440 4.440 12 H 0.075 0.925 13 C -0.174 4.174 14 N -0.527 5.527 15 Si 0.747 3.253 16 H -0.209 1.209 17 H -0.210 1.210 18 H -0.202 1.202 19 H 0.098 0.902 20 H 0.078 0.922 21 H 0.031 0.969 22 H 0.039 0.961 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.163 9.285 -5.197 10.642 hybrid contribution -0.846 -0.601 -0.853 1.343 sum -1.009 8.684 -6.050 10.632 Atomic orbital electron populations 1.22362 0.87812 1.03162 0.98588 1.61744 1.07064 1.11733 1.43855 1.22068 0.95774 0.89939 0.99257 1.21571 0.94589 0.99191 1.00061 1.21595 0.99701 0.96749 0.97637 1.21514 0.93409 0.95724 1.03936 1.21654 0.95871 0.93519 0.90040 0.94953 1.22193 0.96134 0.91059 0.90884 1.85751 1.70410 1.26275 1.36308 1.20803 1.28273 0.89075 1.05873 0.92516 1.24882 0.98234 0.98460 0.95818 1.70039 1.35973 1.36282 1.10391 0.86055 0.78539 0.83233 0.77431 1.20895 1.21010 1.20248 0.90208 0.92219 0.96887 0.96113 0.91341 0.92413 0.90659 0.93253 0.92199 0.88824 0.92332 0.96006 0.95968 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 8.89 60.07 0.53 1.04 16 2 N -0.52 -9.99 4.68 -234.92 -1.10 -11.09 16 3 C 0.06 0.90 5.46 -3.84 -0.02 0.88 16 4 C -0.12 -1.73 6.09 -26.65 -0.16 -1.90 16 5 C -0.12 -1.80 6.00 -26.61 -0.16 -1.96 16 6 C -0.11 -2.04 5.20 -26.65 -0.14 -2.18 16 7 C 0.10 1.89 2.22 -67.72 -0.15 1.74 16 8 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 9 C 0.08 1.72 5.22 37.16 0.19 1.92 16 10 O -0.27 -7.88 8.86 -16.48 -0.15 -8.03 16 11 C -0.36 -10.80 9.89 30.88 0.31 -10.49 16 12 H 0.06 1.61 7.77 -52.48 -0.41 1.20 16 13 C 0.02 0.73 5.49 -17.51 -0.10 0.63 16 14 N -0.88 -28.18 13.67 55.48 0.76 -27.42 16 15 Si 0.92 22.53 29.55 -169.99 -5.02 17.51 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H 0.08 1.58 6.54 -51.93 -0.34 1.24 16 20 H 0.06 0.92 7.97 -51.93 -0.41 0.51 16 21 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 22 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.07 0.99 8.01 -51.93 -0.42 0.57 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 2.16 7.56 -51.93 -0.39 1.77 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.50 6.24 -51.93 -0.32 0.17 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 258.21 15.07 3.89 3.89 Total: -1.00 -32.91 258.21 -6.55 -39.45 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -5.23 Total: -3.99 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 0.31 Total: -10.32 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.34 Total: -38.52 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.15 Total: -8.03 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.91 -6.55 -39.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033621.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.100 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds