Wall clock time and date at job start Mon Mar 30 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46846 * 110.99840 * 2 1 4 4 C 1.53035 * 109.52529 * 174.16228 * 3 2 1 5 5 C 1.53120 * 109.27966 * 59.17904 * 4 3 2 6 6 C 1.53122 * 109.16286 * 302.34916 * 5 4 3 7 7 C 1.46854 * 110.99962 * 235.79368 * 2 1 3 8 8 H 1.09004 * 109.45935 * 65.83382 * 7 2 1 9 9 C 1.52997 * 109.46198 * 305.85132 * 7 2 1 10 10 O 1.42900 * 109.47479 * 296.07249 * 9 7 2 11 11 C 1.34919 * 117.00089 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00484 * 359.97438 * 11 10 9 13 13 C 1.38639 * 120.00000 * 180.27488 * 11 10 9 14 14 N 1.31584 * 119.99860 * 359.72237 * 13 11 10 15 15 Si 1.86792 * 120.00064 * 179.72672 * 13 11 10 16 16 H 1.48504 * 109.47390 * 90.00207 * 15 13 11 17 17 H 1.48504 * 109.47072 * 209.99798 * 15 13 11 18 18 H 1.48498 * 109.47395 * 329.99863 * 15 13 11 19 19 H 1.09003 * 109.46996 * 190.77292 * 1 2 3 20 20 H 1.08997 * 109.47177 * 310.76799 * 1 2 3 21 21 H 1.08995 * 109.47270 * 70.77723 * 1 2 3 22 22 H 1.09005 * 109.46642 * 294.17892 * 3 2 1 23 23 H 1.08999 * 109.46240 * 54.16140 * 3 2 1 24 24 H 1.09001 * 109.50742 * 179.12591 * 4 3 2 25 25 H 1.09007 * 109.50083 * 299.24115 * 4 3 2 26 26 H 1.09003 * 109.52354 * 62.25347 * 5 4 3 27 27 H 1.08999 * 109.52764 * 182.38016 * 5 4 3 28 28 H 1.08997 * 109.50129 * 297.71200 * 6 5 4 29 29 H 1.08997 * 109.50287 * 177.59007 * 6 5 4 30 30 H 1.08994 * 109.46840 * 176.06954 * 9 7 2 31 31 H 1.09004 * 109.46982 * 56.07403 * 9 7 2 32 32 H 0.96996 * 119.99992 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5371 -1.0144 6 6 3.5182 -0.8714 -1.0210 7 6 1.9953 -0.7707 -1.1338 8 1 1.7326 -0.2706 -2.0661 9 6 1.3892 -2.1755 -1.1205 10 8 1.8082 -2.8640 0.0595 11 6 1.3577 -4.1248 0.2257 12 1 0.7100 -4.5690 -0.5157 13 6 1.7210 -4.8481 1.3512 14 7 2.5098 -4.3068 2.2548 15 14 1.0911 -6.5909 1.5850 16 1 2.0432 -7.5486 0.9672 17 1 0.9677 -6.8822 3.0360 18 1 -0.2385 -6.7278 0.9379 19 1 -0.3633 -1.0096 0.1921 20 1 -0.3633 0.6710 0.7783 21 1 -0.3633 0.3383 -0.9703 22 1 1.7324 1.8609 -0.9376 23 1 1.5636 1.9256 0.8331 24 1 3.9099 2.3513 0.1311 25 1 3.7813 0.8568 1.0906 26 1 3.8887 1.0356 -1.9561 27 1 5.1999 0.4725 -0.8912 28 1 3.7814 -1.3835 -0.0955 29 1 3.9099 -1.4301 -1.8710 30 1 1.7252 -2.7244 -2.0001 31 1 0.3017 -2.1021 -1.1315 32 1 2.7637 -4.8127 3.0424 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261033621.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:31 Heat of formation + Delta-G solvation = -59.876575 kcal Electronic energy + Delta-G solvation = -13439.387525 eV Core-core repulsion = 11206.297113 eV Total energy + Delta-G solvation = -2233.090412 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.25174 -37.76415 -34.45190 -33.94558 -32.26998 -28.05434 -27.11828 -26.04486 -23.76640 -22.14506 -20.50968 -19.54301 -17.38624 -16.64782 -16.44898 -15.93530 -15.42522 -15.20353 -14.99310 -14.32908 -14.05199 -13.85360 -13.40928 -13.07849 -12.80145 -12.71733 -12.55333 -12.17391 -12.03538 -11.65876 -11.46024 -11.37863 -11.15254 -10.82502 -10.05401 -9.02877 -8.10480 -5.78796 1.39402 1.45979 1.54816 2.35914 3.03578 3.21677 3.74708 3.91334 3.99846 4.07762 4.26740 4.45191 4.51124 4.55364 4.56187 4.68823 4.73248 4.80097 4.93030 4.97609 5.06381 5.09566 5.12260 5.25111 5.33772 5.38633 5.63336 6.26174 6.30403 6.38349 7.31639 8.17286 9.13879 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050045 B = 0.009440 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.364142 B = 2965.373091 C = 3104.567623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.556 5.556 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.106 4.106 7 C 0.102 3.898 8 H 0.063 0.937 9 C 0.068 3.932 10 O -0.308 6.308 11 C -0.378 4.378 12 H 0.065 0.935 13 C -0.040 4.040 14 N -0.934 5.934 15 Si 1.001 2.999 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.261 1.261 19 H 0.044 0.956 20 H 0.076 0.924 21 H 0.036 0.964 22 H 0.044 0.956 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 10.280 -7.061 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.282 5.282 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.144 4.144 7 C -0.006 4.006 8 H 0.080 0.920 9 C -0.010 4.010 10 O -0.223 6.223 11 C -0.458 4.458 12 H 0.083 0.917 13 C -0.233 4.233 14 N -0.579 5.579 15 Si 0.823 3.177 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.186 1.186 19 H 0.062 0.938 20 H 0.095 0.905 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.097 0.903 24 H 0.112 0.888 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.657 10.121 -6.368 11.976 hybrid contribution -0.703 -0.785 -0.548 1.188 sum -1.361 9.336 -6.916 11.698 Atomic orbital electron populations 1.22273 0.87166 1.01523 1.00478 1.61670 1.08061 1.14151 1.44290 1.22160 0.95928 0.88021 1.00860 1.21597 0.94499 1.00810 0.98446 1.21560 1.00096 0.94184 0.99067 1.21441 0.93724 0.98028 1.01224 1.21602 0.95745 0.91694 0.91604 0.91965 1.22491 0.96665 0.92797 0.89011 1.85709 1.71189 1.26233 1.39161 1.21315 1.28245 0.89865 1.06339 0.91734 1.26121 0.98361 1.03618 0.95233 1.70229 1.37783 1.38663 1.11203 0.84834 0.78590 0.76681 0.77574 1.19661 1.20492 1.18556 0.93750 0.90518 0.94545 0.93788 0.90279 0.88817 0.93650 0.90517 0.91126 0.94254 0.91893 0.95648 0.95627 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 8.89 127.69 1.13 2.27 16 2 N -0.56 -20.98 4.68 -897.16 -4.20 -25.18 16 3 C 0.06 1.65 5.46 86.33 0.47 2.12 16 4 C -0.12 -3.21 6.09 30.65 0.19 -3.02 16 5 C -0.11 -3.13 6.00 30.67 0.18 -2.94 16 6 C -0.11 -4.01 5.20 30.65 0.16 -3.85 16 7 C 0.10 3.88 2.22 44.94 0.10 3.98 16 8 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 9 C 0.07 3.15 5.22 71.98 0.38 3.52 16 10 O -0.31 -18.43 8.86 -81.88 -0.73 -19.15 16 11 C -0.38 -23.17 9.89 67.92 0.67 -22.50 16 12 H 0.06 3.71 7.77 -2.91 -0.02 3.68 16 13 C -0.04 -2.44 5.49 84.83 0.47 -1.98 16 14 N -0.93 -61.38 13.67 21.61 0.30 -61.08 16 15 Si 1.00 46.62 29.55 68.60 2.03 48.65 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 H 0.04 1.79 6.54 -2.39 -0.02 1.77 16 20 H 0.08 2.27 7.97 -2.39 -0.02 2.25 16 21 H 0.04 1.04 8.12 -2.39 -0.02 1.02 16 22 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.08 2.08 8.01 -2.39 -0.02 2.06 16 24 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.90 7.56 -2.39 -0.02 1.88 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.03 1.16 6.24 -2.38 -0.01 1.14 16 32 H 0.26 15.79 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -73.20 258.21 2.21 -70.99 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.07 Total: 8.18 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 3.75 Total: -22.40 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -3.90 Total: -86.26 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.73 Total: -19.15 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -73.20 2.21 -70.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033621.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.112 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds