Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00144 * 2 1 4 4 C 1.53044 * 109.51335 * 185.83239 * 3 2 1 5 5 C 1.53117 * 109.27792 * 300.82256 * 4 3 2 6 6 C 1.53127 * 109.15989 * 57.65607 * 5 4 3 7 7 H 1.08997 * 109.50037 * 62.28538 * 6 5 4 8 8 C 1.52999 * 109.49906 * 182.36450 * 6 5 4 9 9 O 1.42900 * 109.46578 * 184.99905 * 8 6 5 10 10 C 1.34923 * 117.00157 * 179.97438 * 9 8 6 11 11 H 1.08008 * 119.99874 * 0.02562 * 10 9 8 12 12 C 1.38638 * 120.00671 * 179.97438 * 10 9 8 13 13 N 1.31576 * 120.00175 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99547 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47417 * 89.99847 * 14 12 10 16 16 H 1.48506 * 109.47049 * 209.99844 * 14 12 10 17 17 H 1.48507 * 109.47256 * 329.99783 * 14 12 10 18 18 C 1.46830 * 110.98168 * 124.21418 * 2 1 3 19 19 H 1.09001 * 109.46924 * 56.04691 * 1 2 3 20 20 H 1.09000 * 109.46915 * 176.04679 * 1 2 3 21 21 H 1.08999 * 109.47074 * 296.04862 * 1 2 3 22 22 H 1.09002 * 109.46448 * 65.81961 * 3 2 1 23 23 H 1.08994 * 109.45958 * 305.84326 * 3 2 1 24 24 H 1.09001 * 109.49858 * 60.76701 * 4 3 2 25 25 H 1.09000 * 109.49965 * 180.88251 * 4 3 2 26 26 H 1.08997 * 109.52073 * 177.56286 * 5 4 3 27 27 H 1.08998 * 109.52156 * 297.68928 * 5 4 3 28 28 H 1.08997 * 109.47187 * 304.99964 * 8 6 5 29 29 H 1.08993 * 109.47060 * 65.00691 * 8 6 5 30 30 H 0.97003 * 119.99713 * 179.97438 * 13 12 10 31 31 H 1.08995 * 109.46742 * 54.13906 * 18 2 1 32 32 H 1.09004 * 109.46459 * 294.16736 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5183 1.3339 -0.1466 5 6 4.1186 0.5366 1.0146 6 6 3.5176 -0.8718 1.0210 7 1 3.7809 -1.3840 0.0955 8 6 4.0681 -1.6565 2.2135 9 8 3.5986 -3.0049 2.1539 10 6 3.9961 -3.8361 3.1396 11 1 4.6401 -3.4717 3.9264 12 6 3.5770 -5.1576 3.1433 13 7 3.9651 -5.9682 4.1043 14 14 2.4625 -5.7877 1.7831 15 1 3.2907 -6.3130 0.6680 16 1 1.5998 -6.8739 2.3133 17 1 1.6110 -4.6770 1.2865 18 6 1.9948 -0.7709 1.1337 19 1 -0.3633 0.5740 -0.8525 20 1 -0.3633 -1.0252 -0.0708 21 1 -0.3633 0.4513 0.9233 22 1 1.7325 1.8609 0.9375 23 1 1.5636 1.9256 -0.8331 24 1 3.7814 0.8564 -1.0905 25 1 3.9102 2.3508 -0.1308 26 1 5.1995 0.4708 0.8909 27 1 3.8894 1.0357 1.9561 28 1 5.1575 -1.6493 2.1816 29 1 3.7286 -1.1944 3.1404 30 1 3.6715 -6.8927 4.1070 31 1 1.5627 -1.7715 1.1241 32 1 1.7320 -0.2709 2.0660 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261034275.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = -67.138800 kcal Electronic energy + Delta-G solvation = -13161.754229 eV Core-core repulsion = 10928.348904 eV Total energy + Delta-G solvation = -2233.405326 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.20749 -38.29857 -34.93009 -34.02147 -32.33215 -27.89528 -27.49957 -25.62727 -23.71773 -22.42702 -20.72844 -19.69607 -17.57155 -16.77549 -16.55876 -15.88692 -15.63895 -15.36875 -14.88926 -14.61009 -14.36672 -13.88015 -13.62945 -13.16843 -13.02899 -12.91367 -12.48628 -12.22710 -11.94102 -11.68824 -11.59731 -11.39260 -11.31826 -11.14663 -10.37977 -9.29735 -8.29348 -5.99518 1.36535 1.40207 1.59282 2.42532 2.96009 3.03717 3.31842 3.85213 3.89915 4.11792 4.15676 4.34442 4.48466 4.52973 4.56898 4.60688 4.71681 4.79262 4.83748 4.89411 4.97897 5.01163 5.08488 5.19055 5.33435 5.46744 5.58291 6.06870 6.12634 6.20344 7.09918 7.80210 8.86662 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045196 B = 0.009497 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.368581 B = 2947.729306 C = 3383.190886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.052 3.948 4 C -0.109 4.109 5 C -0.110 4.110 6 C -0.075 4.075 7 H 0.071 0.929 8 C 0.082 3.918 9 O -0.346 6.346 10 C -0.360 4.360 11 H 0.048 0.952 12 C -0.014 4.014 13 N -0.953 5.953 14 Si 0.975 3.025 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.263 1.263 18 C 0.072 3.928 19 H 0.089 0.911 20 H 0.058 0.942 21 H 0.026 0.974 22 H 0.033 0.967 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.027 0.973 30 H 0.274 0.726 31 H 0.052 0.948 32 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 15.692 -9.821 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.282 5.282 3 C -0.075 4.075 4 C -0.147 4.147 5 C -0.147 4.147 6 C -0.094 4.094 7 H 0.089 0.911 8 C 0.005 3.995 9 O -0.262 6.262 10 C -0.439 4.439 11 H 0.066 0.934 12 C -0.207 4.207 13 N -0.600 5.600 14 Si 0.800 3.200 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.056 4.056 19 H 0.107 0.893 20 H 0.077 0.923 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.111 0.889 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.937 15.286 -10.361 19.115 hybrid contribution -0.315 -0.318 1.047 1.139 sum -5.252 14.968 -9.314 18.394 Atomic orbital electron populations 1.22388 0.86420 1.02277 1.01194 1.61920 1.08596 1.14719 1.43001 1.22228 0.96139 0.88137 1.01044 1.21571 0.94037 1.00914 0.98174 1.21560 1.00567 0.92910 0.99706 1.21116 0.94659 0.96353 0.97271 0.91094 1.22371 0.96966 0.82786 0.97346 1.85163 1.72997 1.19646 1.48393 1.20374 1.28401 0.92194 1.02888 0.93434 1.25206 1.00113 0.95113 1.00262 1.69796 1.48754 1.06493 1.34986 0.85120 0.78817 0.77626 0.78481 1.19806 1.20378 1.18794 1.21890 0.95103 0.97422 0.91192 0.89280 0.92272 0.95540 0.94914 0.88902 0.91349 0.88729 0.90670 0.91776 0.94765 0.95503 0.91648 0.92902 0.95443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.59 127.69 1.22 1.81 16 2 N -0.56 -15.52 4.91 -922.62 -4.53 -20.05 16 3 C 0.05 1.11 5.47 86.33 0.47 1.58 16 4 C -0.11 -2.22 6.09 30.65 0.19 -2.04 16 5 C -0.11 -2.79 5.29 30.68 0.16 -2.62 16 6 C -0.08 -2.58 2.59 -10.74 -0.03 -2.61 16 7 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 8 C 0.08 3.55 5.40 71.98 0.39 3.93 16 9 O -0.35 -18.80 8.17 -81.92 -0.67 -19.47 16 10 C -0.36 -22.21 10.35 67.92 0.70 -21.51 16 11 H 0.05 3.12 8.00 -2.91 -0.02 3.10 16 12 C -0.01 -0.85 5.49 84.83 0.47 -0.39 16 13 N -0.95 -60.98 13.96 21.61 0.30 -60.68 16 14 Si 0.98 49.07 28.61 68.60 1.96 51.04 16 15 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.26 -13.11 7.11 99.48 0.71 -12.41 16 18 C 0.07 2.46 4.64 86.33 0.40 2.86 16 19 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 20 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 22 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 31 H 0.05 2.14 7.83 -2.39 -0.02 2.12 16 32 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -68.95 261.78 2.10 -66.85 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.06 Total: 1.27 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.98 Total: -18.97 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -4.23 Total: -80.72 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.67 Total: -19.47 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 1.96 Total: 51.04 kcal Total: -68.95 2.10 -66.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034275.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.284 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds